Array 1 8111-11278 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRM01000032.1 Tetragenococcus halophilus strain WJ7 sequence032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8111 32 100.0 34 ................................ AACAATTTATGAAAGAAGTGGAAATAGTATTAAA 8177 32 100.0 34 ................................ CTTTTCCTTCAACCGCTCCGCATTGTCCGAATTT 8243 32 100.0 36 ................................ TAATTAGCAACTTATCTAAAAAAGGTTATATAAGCG 8311 32 100.0 35 ................................ CCCGCTAAGAGGCGATTGAATTTTAATTTGCGTAC 8378 32 100.0 34 ................................ ATTGTCAGTCGTCTGGGGAACCATTGCATATTCA 8444 32 100.0 34 ................................ AACGCCTAAGTCATCAAGGACGACCAAATCCGTT 8510 32 100.0 35 ................................ CGACATTATTATTAAACGAAAATCCGACAATAGCG 8577 32 100.0 35 ................................ AAGACGCTAGAGATACCGGAGAAGACTATTACCTT 8644 32 100.0 35 ................................ ATTTGAACTTGTGTCCATTTAATCATGTTACTTAC 8711 32 100.0 35 ................................ ACTTTTCCAAATACTTTTTTGTTATTTAATTCAAC 8778 32 100.0 34 ................................ ATTTTTTTTTCAAAGTTATCTAGTGGTGTTGTAA 8844 32 100.0 34 ................................ AAAAATAGCGAACGTAATATTGTTTTTAGTATAT 8910 32 100.0 35 ................................ CTAGATTGGGCTTTTCTGCTACTCCTTGGCGTATG 8977 32 100.0 35 ................................ AACGTATCAACGACAATATCGCGGAAATGCGCAAA 9044 32 100.0 34 ................................ TACTTGTTCCAAATCTAATTTTCCTAAAATTTCT 9110 32 100.0 35 ................................ CTTAATCGTTGCCATGGTTTACCTCCATTTGTTTG 9177 32 100.0 35 ................................ GATTGTATCTTTAATCCAGTGATATATCTTTTTAA 9244 32 100.0 35 ................................ TTTTGATTATTAAGGAGGTGCAAACGTTTGATACA 9311 32 100.0 36 ................................ TGAAAGTGTATGCTCCGCTTTGGTTTTGTTGGCCGC 9379 32 100.0 36 ................................ ATCCATCGAATGGGTAAAACTTAACCACGGCACCCT 9447 32 100.0 35 ................................ TCCGATTTGTAAATGTGCTGATTTCCTTAGAATAT 9514 32 100.0 35 ................................ TTAGTAGATCAATAGACCGTTTTTTGTTTTTTAAA 9581 32 100.0 36 ................................ ATTGATTTTACGAGAAAAAGTTTGGTTCGATATCCC 9649 32 100.0 34 ................................ AGCAAAAGAAATACTTATATTTTTATTATTTTAG 9715 32 100.0 34 ................................ TAGGTAATAAAGGCAAGCAAGTAACTCCTCCATA 9781 32 100.0 35 ................................ TGATGACCGCGACGGAAAAAGTAAAGGTCAAGTCA 9848 32 100.0 34 ................................ TGAGTATGTTAAATTACTTGCTGTGAGCAAAACA 9914 32 100.0 35 ................................ TCTCATGGAGGAACAACCCGAGGACTGCTGTTACT 9981 32 100.0 34 ................................ CTACACGGTTGGAAACTTTACGTGTTTGCTTATC 10047 32 100.0 34 ................................ GAAAAATCGGTTGATGATGCAGTAAAAGAATATG 10113 32 100.0 35 ................................ AGAAATACAACGAAAATCCGCAACGGTGTGGGAGT 10180 32 100.0 36 ................................ TTATCGTAGTGCCAACGCACAAAAGCGTTCGGGTCT 10248 32 100.0 35 ................................ GAGAACCTGAACCCGTGAAAGGAAAGAATGATTTG 10315 32 100.0 36 ................................ ATGCTGGAGTTAAGTGCACGCATCTCACGCTTTACC 10383 32 100.0 34 ................................ AAAAGATAATCAATATAATGTAGAAACGCTAAGA 10449 32 100.0 35 ................................ TCTTGAGTATACAGGTAAAGAAGCCCAAGCAACCT 10516 32 100.0 34 ................................ CAAGTGTAGGCTTTCCCGTGGATATGTAAGCCTT 10582 32 100.0 34 ................................ CATAGCGTCAAGATCTGTGTCTGGAAAGACTTCT 10648 32 100.0 35 ................................ TCTTTATACTTCCAAAATGAGTGGTGGGGCTTAGA 10715 32 100.0 33 ................................ TTTTAACTTTAATGTGAGCTAGCCCCAAACCCG 10780 32 100.0 33 ................................ CTGCTGGTTGAATACGAATTCTTTTTGCTCCGA 10845 32 100.0 35 ................................ TGTTGCGTGCTAGCAGATTGGCTACTACCGCTATT 10912 32 100.0 34 ................................ AAACTATTTGAACCAAAAAATACACAAGATATGA 10978 32 100.0 36 ................................ AACATGGAAGAATTTATCGAAGAGAATCTCACAGAG 11046 32 100.0 35 ................................ TATTTTTTGGAAAATGTCTAATTCTGCTGCTGTTG 11113 32 100.0 35 ................................ TCACCCCCTTTCGTTGCTTCCTCGTAGTTTTTGGT 11180 32 100.0 35 ................................ GTCTTTACCATCTAACTTACAAATGAAAGGAAAGA 11247 32 68.8 0 .........C..G...A.A..AC.G.C...TC | ========== ====== ====== ====== ================================ ==================================== ================== 48 32 99.4 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : CTCCACGAAAAACAAAGTTGATAAAGTACGTGCAAGAAGCTAGTATAAAATATAATTTTAACGGTTTATGGATATTTAAGTAGGAAACTATAACTTTTAAACAGTGGACGGATTAAAAGTTCTCAGTTCATTATATTTGGAATTTTTTTAAAAGGATAAGCTGGGTACTTTCTATTTTAGTTAATGCTAATAAACGATTTTAATCCCTATATTTAATGCGGAGTATAAATATATATATAATTAAAAAGTTGAATTAACAGTAATAATTTATACTTTATTTATTGATGAGAACCTGGCAAAATGTACATAAGAGGAAAAGAATAAATAATAGGTGTTGCTTCTCTATGGACTATTTATCATTTACGCGAGTCGAGATCACTCATAAATCACTAAGTTGTCTCGCACCAAATAGCATTGTTTGATAAAAATGAGCCCTTATTTTTTCAACAATGTTTAGTTATTTTTTTATTAAAATGTTTTAAAACCGCGTGTGTTACGCG # Right flank : CTCAATTCTTACTATTCCAGTTTATAGAATGCTTTTTAACTTTATCTGATGTTGGGTACAAATTTAATTACACTCTGATGTGAAATACAAATCTATAACATTTGACATAAAGTCTCTCCGATGTGTGAAGCTATTATATGAATTTCTTGATCAGCTTTTTACTTAAGACTTTTGTTTTAAACTCAATTTCATAAAGAAAAAAACGTAATTTTAAACCACTTGTCTATAAACACTTCCTTTATAAAAAGAATGGGATAAAATAAAAACTGGCAGCAAAGTACTCACCACCTGTCTTTTATTCAAATGAATTTTGTAGCTAGTTTATGAATAAAACCTATTTATTCGTCAACAATACTAAATGATAATTTATAATGGGAGATAATTGATCTATCAAGTGTTGTGATGATTAACGTTTGTTTATTTTCTAAGCCTAATTGTTTTTACAATACAATTTGGAATACGAGTAGCTTTAGAATTTTCCCACTGAAGTAATACGTCTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 20533-23709 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRM01000032.1 Tetragenococcus halophilus strain WJ7 sequence032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 20533 32 100.0 35 ................................ GCTATCTTGATTGGGTACAAGAAGTTGGCGAAAAA 20600 32 100.0 35 ................................ ATTTGTGGTATAATATTTGACAATCATTTGTCTTA 20667 32 100.0 37 ................................ TACAATTTCTAGTAAAAACAAATCATTCTTTCCTTTC 20736 32 100.0 35 ................................ TCCGGGGTCGCCCTTAGGTCCAATCTGGTAATCAG 20803 32 100.0 35 ................................ AGAAGATCAATAAAACCTTTTACCCGATAAACGAA 20870 32 100.0 35 ................................ AGGACGTGACAGTAGAAGCTATCATAATGGGAGCA 20937 32 100.0 35 ................................ TAAATGATGACGGTGGGAAAGAATTTATCCCTAAA 21004 32 100.0 34 ................................ GAAAATATGGGCTTTACAGCACAAGAAACAGAAG 21070 32 100.0 35 ................................ TTATAGTGGCCAACGTCGTTATGTCGCTATGACAA 21137 32 100.0 36 ................................ GGTGTAACTCTCGACTATTTACATGGTAGAGAAGCC 21205 32 100.0 35 ................................ CCCAGTGTACGCCCAACACGACAAGAAATGGCCAA 21272 32 100.0 34 ................................ AATAGATTCCTCAGCCATCAAGTAGCTCAAACGT 21338 32 100.0 35 ................................ AAGACACTAATACTTCAAGAGGAACAATTAATCGT 21405 32 100.0 35 ................................ AAACATAGAGCGCCAGTCCTCTGTTTGGTCTAACA 21472 32 100.0 34 ................................ ATATTGAACAAGTTTTCTTTAATCCTTATCAATC 21538 32 100.0 35 ................................ TTTACGCCCTTAATTCGTAAGATGCCATGTTCGTC 21605 32 100.0 34 ................................ CATTTCGTAAAATTTACGATGCAGCGGACTTGAT 21671 32 100.0 35 ................................ TTGTGTAGAATCATCTAAACCATTCCACCAATCAA 21738 32 100.0 34 ................................ TTTGTCGATTGAATAAAATGATCGGCTTGTGATT 21804 32 100.0 35 ................................ AAGAAACTTCGCAAGACCAGTATGAAAGTAAGATT 21871 32 100.0 36 ................................ CTCCATGGAACAAGTGAAAATGGCATTGGAAATAAC 21939 32 100.0 36 ................................ AAAAGAAGTTTCCTCAAGAGATGGCAAAAAGAACTG 22007 32 100.0 34 ................................ TGATTCATTAAGCAAAAGCTTAGTTGTTCCTATC 22073 32 100.0 35 ................................ TAATAAAATCATCAACGATTATATGGGCACAAAAC 22140 32 100.0 35 ................................ CTTGGCTTTATTGAGCATATCCGTAAAGGCTTTTC 22207 32 100.0 35 ................................ TAAAAACCAAGGAAAAGAAACAAAAGCAACCTTTT 22274 32 100.0 35 ................................ ATTGATGTTTTGCGCAATCCAAGGATAGTTAGATA 22341 32 100.0 34 ................................ AATCTATTGGCCAAGAAATTCAAAAACAACAATT 22407 32 100.0 36 ................................ ACACGTTGTGTATTTGTCTAACTCGGGTTCTCGCTG 22475 32 100.0 34 ................................ TTTGTATCTAGGAGGAAGACAGGAAAGAGAAAAC 22541 32 100.0 35 ................................ TTTTCTGGTTTCTCTCCTGAAGTAATTATCCTTGC 22608 32 100.0 34 ................................ ATACATAATTTGTATTCTCCTTTTTATTTGTTAA 22674 32 100.0 34 ................................ CCTTATGATGACCTAGCAGACGCTTGGCATTACT 22740 32 100.0 35 ................................ TAGGTTAGGGGCAACCTCCCGTGGACTTGCATAGG 22807 32 100.0 33 ................................ AGCAATGGTTAAACGAGGCTTGGATTGATCTTG 22872 32 100.0 35 ................................ CTTTTTTTATTTTACTTTTATATCTTTTTCCGCCA 22939 32 100.0 36 ................................ TGCTAATGTAGATATATGGGTATGACGTAGTATATG 23007 32 100.0 34 ................................ CCCAATATCTAATCCAGAAGCTAGTCCGCCTAGT 23073 32 100.0 35 ................................ ACATCTGTTTTCTTAGCTTCGTGGTCTCCGTGAAC 23140 32 100.0 34 ................................ TTCAGGGCTAAGCTCTCTTCCTAAATACCGTTCC 23206 32 100.0 35 ................................ AGCAAGAATCTTAGAAGCTTTTGCAAGGAGTTTTT 23273 32 100.0 35 ................................ TTATTTTATAACAAAAGATGAGGATGACGAACCTG 23340 32 100.0 35 ................................ TAACATTTGGAATGGCATTAAAAATCTAGCCTCCA 23407 32 96.9 35 ......T......................... GTTGTCCATCTCAGAAAGTGTGGTAATGGATTGTG 23474 32 100.0 36 ................................ TTGAATTAAAAGATGGAGATAAGTTTTTGCTCACTC 23542 32 100.0 34 ................................ AATCTGAGGCAGAAGCCGAATGGTCGGACTGGAA 23608 32 100.0 35 ................................ TACAATAAATGTAGCGGTTTCTTTATTATTTGCCA 23675 32 90.6 0 ...............G............C..G | T,G,T [23699,23702,23705] ========== ====== ====== ====== ================================ ===================================== ================== 48 32 99.7 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : AAGCAATTCGCGATGATTTACCTAGTTACCCACCTTTTATGGCATGAGGAGGTATGCTTATGATGGTTTTGGTTACTTATGATGTAAATACAGAAACGAAGCAAGGTAGAAAGCGTTTGAGACATGTAGCTAACTTATGTGTTGATTACGGACAACGGGTGCAAAATTCTGTTTTTGAATGTTCAGTTGTTCCAGCAGAATTTGTCGAACTAAAAGGAAAATTAGCCAATATTATTAATCCGGAGCTTGACAGTATTCGTTTTTATTTGTTAGGAAAAAACTGGCAGAACAGAGTAGAACAAATCGGAAATAATGATAGTTATGATCCAGATAAAGATGTTTTATTGTTGTAAATTAATTTTGTGCGAGTCGACGTTACACATAAATTACTAAGTCGGTTCGCGAGAAATTGTTGTTATTTTGGAGAAATGAGTACTATTTTTATTATTTATTAACGAATTTCTTCATTTAAAATGGAGAAAAACCGCATGACTTCCGCG # Right flank : TTTATTGAGGTTGAATAAAAAATCGTCTTTTGGGGGAAACACTAAGTTGTTTTTCAACCTCAATTTTCTTCGATTTTCCCTTATTATTACTCAAGTTTCGCACATAAAAAAATAGGATAATCCATTGCCAGATCTGGGCCTGCATTGAATTCAATCGCCTTCTTGACTTTTTTAACAAAAGATACAAAAAGAACTCGCTTTGTTTTATAATTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //