Array 1 223375-224202 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZF01000001.1 Streptococcus halichoeri strain P399 NODE_1_length_227688_cov_223.517233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 223375 36 100.0 30 .................................... CTCTTTATCTTTAGTCAGCTCAAAAGTCTG 223441 36 100.0 30 .................................... GTGAGTCAACGGGTGTCTTTAAAAGCCTTG 223507 36 100.0 30 .................................... ATTAGATATTGCAAAATCAATCAAAAAAGA 223573 36 100.0 30 .................................... TCGTGCCAATATTTTGTATCAGTCCTAGCC 223639 36 100.0 30 .................................... ATTGGTACGAAGAGAATAAAGAAGGCCTTT 223705 36 100.0 30 .................................... TTCAACATAGAGGAATGACAACTCAAGAAT 223771 36 100.0 30 .................................... TCGGCATCTGATAAGGAATACTTACGTATA 223837 36 100.0 30 .................................... TAGCTTATACTATTAACACTTCTTTATACT 223903 36 100.0 30 .................................... TGTTCTTATACATCTTTGTTCCAATAGGGG 223969 36 100.0 30 .................................... AAAAAAGCTAAGATTTTCAGAAGTGAATGG 224035 36 100.0 30 .................................... AAAAAAGCTAAGATTTTCAGAAGTGAATGG 224101 36 100.0 30 .................................... TAACAGCACACAAACTAATGGTGGTACGCT 224167 36 94.4 0 .T.............A.................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATTACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAGTATATTGAATTATCTCAGCAAACGGTCCTCTTATTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTTCTAAAAACCTTGATTTCATAAGGCTTTTGCCGTATAATAATGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : CGAGTGGTAAAAAAATGTCGCATCATGTGAGGGGTAACACGAAAACCAAAAATTTTGTACGACAAATACCTAGCACTTCACAAAAAATAAGACAAAGCTATTTATACAGAATTATGTATGTCTGAGAGTTTTTATTATGATACGCTTGATATTGCACTATTAGCTTTTACAGAGCTTTACAGAGAGGGTTCTTTGATTGTTGAACGAGGAGTTTTTAGCTGGTTTATACAGTAAGTGAGCAGTTTATACGTGAAATTGTATGCTATTATAGTACTATCAAAATAGCAAGAAGAGATAACTGTTTTTTCAATTGATTATATTTAGTCGCCAACTTTAACGACGATCAAACTTGTTATTTTATGGGGACGGTCCCCCGGCGGGGACCATTTATCCGTCATGGCTCAAAACGAGGAATGCTAATGGACGCATCAAGAACCGTCGCATGTGCAGAACAGCAGACTGATAATCTGAGGTGTTAGTTCGAATCCGGTTGACGAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 226932-227363 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZF01000001.1 Streptococcus halichoeri strain P399 NODE_1_length_227688_cov_223.517233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 226932 36 100.0 30 .................................... TTAGGCTTCGTAAAGTCGGCAGCGCCCTTT 226998 36 100.0 30 .................................... AAAATCTCTAAAGGTTTTGCTTGATGTCCA 227064 36 100.0 30 .................................... AGTAAATAAAGACAAGTATCGGCTCCCACC 227130 36 100.0 30 .................................... GTATTAAGTAGAGATTTATGCATTTCTTGG 227196 36 100.0 30 .................................... GTTGGATAGAGCAGGAGACTTCTAATCTCA 227262 36 100.0 30 .................................... TAAAATACAAATACACATTCGTTTGTAGGT 227328 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : CAAATGATGATAATATCTAAGTTTAGATTTACAATCCAGTTAATGGCGTAGCATAAAACAGTGACATGTACCCTTTTTACTGGACTAATCCAGTGAAAGGTTTTTTGTATGAAATATAATTATAAGTTTAAGTTAAATGCAGTAGAAATGTATCAATTAGGACAGTGGATTGATACTCCAGATCGTACTGGGGTCTTTTCTATGGTTACTACAGCCAAAATCGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTTCGCCTAGAAATTAATCTGAGAAAGCTGAAAAGCAGCGCAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : AAGTGTTAGCTCCGCCTTTCCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGTGCCAGAAAGTGAGTATACTAAGAAAGTTGTCAGCTGATTAGCGTAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAAGCCTTAAGAAGCTGATAGAATAAAGAAGTTGCCTCGCAAGAGGGGAAAGACCTTTGAGAACTGAATAAGACGAACCAAAAAGTGAAGAGGGGTTTATAAGCAGTATAGACTCCGTCAAAGCAAGAATAAATCTGTCAGCGGACAGCAAAGAACGAGTAAGTTCAAACTAAATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 57128-57361 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZF01000014.1 Streptococcus halichoeri strain P399 NODE_14_length_57582_cov_192.274381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57128 36 100.0 30 .................................... GATAATTTTTCACATTCAGGAAATGAAAGC 57194 36 100.0 30 .................................... GTCGTTCATAAGAGTATGTGACTTTGCCGT 57260 36 97.2 30 ...............A.................... CTTTAATAGGCAAGTTAGGAACAGTCTTTG 57326 36 83.3 0 ...............A.............TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTAGAGCTATGTGGTTTTGAATGGTCCCAAAAC # Left flank : GCTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGCTATGCCGTGCTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAATGATGTGATAGGTAAAGGGGAAATGAATGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAGGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTTCGCCTAGAAATTAATCTGAGAAAGTTGAAAAGCAGCACAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : AAGTGTTAGCTCCGCCTTTCCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGTGCCAGAAAGTGAGTATACTAATAAAGTTGTCAGCTGATTAGCGTAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAAGCCTTAAGAAGCTGATAGAATAAAGAAGTTGCCTCGCAAGAGGGGAAAGACCTTTGAGAACTGAATAAG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTGGTTTTGAATGGTCCCAAAAC # Alternate repeat : GTTTTAGAGCTATGTGGTTTTGAATGGTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 584-152 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZF01000016.1 Streptococcus halichoeri strain P399 NODE_16_length_56330_cov_238.854830, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 583 36 100.0 30 .................................... TCTATGTAAACACAACCATACTGACCACCA 517 36 100.0 30 .................................... TTTTATCCAATTCCCCACCTGCTTGGTCGA 451 36 100.0 30 .................................... ATTGATGATTTTGAAACTGTTATTGGTCAT 385 36 100.0 30 .................................... TGCTTCATTTGGCACTTTAGAAGAGTGGAA 319 36 100.0 30 .................................... GCATTTAGTAGACAGCTGGACAGTTGATTA 253 36 100.0 30 .................................... GCATTTAGTAGACAGCTGGACAGTTGATTA 187 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AACTAGCAACAGACCAAACGTTAATCTCCCGAAAAGTCCGTTGAAGCATCCCAGTAAGCAGTAAAAACTGAGAATATAAGAGCATATAAATTGCTTTGGGGATCGATACAGTGTCTTAGACCATAGTCCAAAGCGAGTATTTGTCATCCCCCGAATAGACAGAAAAAAAAGAGTCACGCTATCCAATTGTTCATAACTCTCCTGATAAATCGATTGCTGTCATCAATCAAGCCAAGCATTTGGAATACAAAACATCAGCCAAATGCTAGCATAGCAGCTGAGGAATCAGAGATTAGAGGCTTAATAAAAATTTTTGAACCTAAACTGAAAAGGTACTGACGATTAATCAGCCGACAACCATGATAGTTAGCCTTCTTAACGCATTGATTTCGCAAGAATTTTGCCGTATAATAGTGCTATGAAAGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCGCCTTTCCCCGTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGTGCCAGAAAGTGAGTATACTAATAAAGTTGTCAGCTGATTAGCGTAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //