Array 1 98032-99951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKR010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5723 .24042_7_356.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98032 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98093 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98154 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98215 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98276 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98337 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98398 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98459 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98520 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98581 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98642 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98703 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98764 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98825 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98886 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98947 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99008 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99069 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99130 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99191 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99252 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99313 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99374 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99436 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99497 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99558 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99619 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99680 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99741 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99802 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99863 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99924 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116084-117450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKR010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5723 .24042_7_356.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116084 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116145 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 116206 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116268 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116329 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 116402 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116463 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116524 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116585 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116646 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116707 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116768 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116829 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116890 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116952 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117055 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117116 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117177 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117238 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117299 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117360 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117421 29 96.6 0 A............................ | A [117447] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //