Array 1 16959-19428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMX010000508.1 Streptomyces sp. SID8016 contig-30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 16959 30 96.7 31 .............................T CCGCTGCGGTTTCTGGGTCTTGGTCGCGGCT 17020 30 100.0 31 .............................. TCGGGGCGATGAGGCCGGTACCGGCGAGGAC 17081 30 96.7 31 .............................A GGTCCGTCGCGCTGATACTGACGCTGCTGGC 17142 30 96.7 31 .............................T TCGCGGGCCGCAGCAAGCGGGTCCAGCGACT 17203 30 96.7 31 .............................C GCGCGGCAGGCGGACCTAGACGTCGTCCCGC 17264 30 96.7 31 .............................A CCCGGCGACGTGAGCCACTGCCAGCCGGCCC 17325 30 100.0 32 .............................. CGTATGCCCTTGTCGCATGGACGGATGGGCGG 17387 30 96.7 31 .............................C ACCACCCCGGGCAGCGGGAACTTGTCGCTCG 17448 30 100.0 31 .............................. AGGCGCGCGCGCTGGCGGACCAGATCCTGCG 17509 30 96.7 31 .............................C CCGGCTGGAGCCCGTCGTACGGCCCGGCACG 17570 30 96.7 31 .C............................ TGTCCCACTGGCCGTTCGTGAACAGGGGAAG 17631 30 96.7 31 .C............................ AAAGGTGATTTACATGGACGCGGACCAGGCT 17692 30 100.0 31 .............................. GCAGCCTGGCCCTGGTGGCGCAGCGCACCGA 17753 30 96.7 31 .............................T CGGCCTGCGTCAACCGGCCGTTGGCCGCCCA 17814 30 96.7 31 .............................T GGTCGTGGATCGGCGCGGCGTAGTCGCTGCG 17875 30 96.7 31 .............................A ACGTGGGGCGGCCTGGCATCTCGGACCTTCC 17936 30 96.7 31 .............................T CCTGCGGACCGGGACCGTCGAGGACTGCGGC 17997 30 100.0 31 .............................. GCTTCGCGTCCGTGTAGACGCGGGCCGCCCC 18058 30 100.0 31 .............................. TGCCCTGGTCACGCGCGACGCCCGCCACCGT 18119 30 96.7 31 .............................T GTGCCGCCGCGGCATCTTGCAGCTCATGGAG 18180 30 96.7 31 .............................A CCACGGCCCGGGTGTTCCCCGGGGGAACGCA 18241 30 96.7 31 .............................T ACCTCCCCGACGCACTGCCGTCCCCGGCCGC 18302 30 96.7 31 ...A.......................... CCTGGACGATGTCGCCGCCGAGCCAGGAGGC 18363 30 96.7 31 .............................C TCTCCCGGGCGCAGCGGACCGTCCAGCTCAT 18424 30 93.3 31 .G...........................C GGTGAGGTAGCGGCGGGCGTAGGCCAGGCCG 18485 30 93.3 31 ............................TC TCCGCGATCGTGTTGAACGGCGCGTCCTCCT 18546 30 96.7 31 .............................C GCAGACGCGCTACGCGAGGTACTGGAAGTCG 18607 30 100.0 31 .............................. GCTGCTGGTGCCCCACTCCTTGCGCGCCAGG 18668 30 96.7 31 .............................T GGCCGGGCGATATCCGGGAGTTGAGCAATCA 18729 30 96.7 31 .............................T GGCCCCAAAGGTCTGGTGCACGCAGAAACTT 18790 30 96.7 31 .............................A ACACGATCGTCCCGATGTACAACGGCATCGG 18851 30 96.7 31 .............................C GCGACAACCAGGGCGACGGTGGCCTCGTCGG 18912 30 96.7 31 .............................A TGCGGCTGGACTGGTATTTCGCCCTCCCCGT 18973 30 100.0 31 .............................. CGGCGCACTACGCGATCGTCGGGCTCGTCGG 19034 30 96.7 31 .............................T GGCGCAGATCGAAAGCCACCTGTTCCATAGA 19095 30 100.0 31 .............................. GGCTGCTGCCGAAGACGACGGGTCTCGTCAA 19156 30 100.0 31 .............................. ACCAGGCGTGCGGGTGCACCTGGCGCGAGGA 19217 30 100.0 31 .............................. TGTGCTCGGGGCTGACCATGCCGCGGCCGCG 19278 30 96.7 31 ............................T. GCCGCCCCGGCGGCGCCGACGAGGACTGGGT 19339 30 93.3 31 .........................C...T GGGTGCCGTACTCGTTGAAGGTGTCAAGCAG 19400 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== ================================ ================== 41 30 97.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AGCGCCTCCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGGACCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCACCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCCACGAAGGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGGCCGGATGGCGGGCAGAATGGCATCAGCCAAACCACACCTGTGGCCACTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GCATGGACTGCCCCGGCCGCCCCGGAAGGAATGATCGAGAATGCGACCCGCCCGATTCCAGAACTTCGCCGTAGAAGCGCGCGCCAAGGCGCCCGACGTCAAGAGCGTCGAGCCGTGGCAGGAGCCGGACCGCCCCTTCGGCGTGCACATCCTGTTCATGAGCGGTGCCCAGATCTGGGCGGCCATCACGGCCACAGCCGCTCCCGGCGAGGACTACAAGCAGCCGGAGAATCCTGTCAGCTACGAAGCTCCCGCCGAGGTGGCGTACTCGGACCTGTATGAGGGCGGGAAGGTCACCCCACAACTGGCGGAGAAGTACCTCGCCGCAGCTTTCACGAACAGTGGCTCACCGGAGATCGAGACGGTATACGCCTACTCGGTGAAAGACCCCGCCACCGCCCACCCTGGCCTCGGCCTGCGGTTTCACAGCGAGGCCCGGATCCAGCTGCTGTTCCAGCACACCGCCCGCTCCGGCCAGGACAAGGGCAACTCACCTTTCG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21805-20372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMX010000381.1 Streptomyces sp. SID8016 contig-7000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 21804 30 93.3 31 ...........C.................C TCCCAGGTGCGGCCGTCCCACTCGACGCGCT 21743 30 93.3 31 ...........C.................A AGTCCCGCGTCACCGCCTGGCGCGGCAGCCG 21682 30 96.7 31 ...........C.................. TCGTCCTGGACGGCGCCAGGAGCTCCTGGAG 21621 30 96.7 31 .............................A TGCTCGCCAACCGCCGGGACCGGAACGCTTC 21560 30 96.7 31 ............................T. CCCTTTCCTGCCGTGGGTGTCGGTCTCAGTG 21499 30 96.7 31 .............................C GGGTTGGGGTCACCACGTCCGGAGGCCGGAG 21438 30 96.7 31 .............................T GCGCCTGCCGGCCGAGACCGTTCTGCTCTTC 21377 30 100.0 31 .............................. CGGCCGCGCCCGAGCCGATCCCGAACCGGGA 21316 30 96.7 31 .............................C AGTCGGCGGAGTCCCCGCCGAGCGCGGCGGG 21255 30 100.0 31 .............................. ACCGGACGCTCGCCCTGCTGGACGAGGCTGA 21194 30 96.7 32 .............................A TCCACCGGGCGAGCGTCTCCTCGTCCTCTTGG 21132 30 96.7 31 .............................T ACAACCTCCGGGTGGGCGACCCGGGCACGGT 21071 30 96.7 31 .............................T CGCCGCGTGGCTCAATGACCTTGGGTACCGC 21010 30 100.0 31 .............................. TGAATCCGACTGGGTTCGCGTTCCGGGTGCG 20949 30 93.3 31 .......T.....................C GACCGGCGCGGGGGCCCCACGAGGACACGTC 20888 30 100.0 31 .............................. TGCCGGGTGGTGATCGTGATGACCTTGTTCT 20827 30 100.0 31 .............................. CTGTGCCCCTCCACCCGAGACCCGGAGCTGG 20766 30 96.7 32 .............................A CTTCAAGGGTGGTCGCCTTGGCCAACTCGTCG 20704 30 96.7 31 .............................C GTACCACGTCACGCCCGGCCCTGTGAAGCAT 20643 30 100.0 31 .............................. GGACGGAGACCGTAGGGTCGTCGCCCTCGCC 20582 29 93.3 31 .....-.......................T CGCCAGTCCCGGTCTCCTGGCGCTCGGCCAG 20522 30 96.7 31 .............................T CCAGCCGTGCGCGGGCGGCGGTGGCCCGGTG 20461 30 100.0 31 .............................. CCCCGTCGCGGGTGTGCGACGGGGCGTTCGT 20400 29 93.3 0 .........................-...A | ========== ====== ====== ====== ============================== ================================ ================== 24 30 97.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGACAAAATCCCGCCCCACATCCCCACGACGACAGAAGCCCGATCACCGAGCACCTCCAAACCCACCCACGAAACCCTCATCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCCGGGGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCACACACCACCGGCAGCAACGACGCCACCGCACCCACCCCAGAAGAAATCGCCGCCGTCAAAGCCCATATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCAGGCACGCCACACCCCCGGGGGCCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCAAAGCCCGGACGATGAGAACAGCAGTGGGCAGAATGACATCAGCCGAACCACACGCATGACCCTTTTATGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACT # Right flank : CGCACCATCGCTTAGCGGGGGTGGCCCACGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCGTAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGCAGCCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGTCAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9949-10527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMX010000308.1 Streptomyces sp. SID8016 contig-1000018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 9949 30 96.7 31 .............................C GCAGGGGCGGCCGGTGCGGCCCCTCGGGGTG 10010 30 96.7 31 .............................C CGGCGACCGGCCCAGACGGCACGTCCGGCGG 10071 30 93.3 31 ............................GA CGCCATCAGATGGGCGCGGCGCGAGGCCGAA 10132 30 100.0 31 .............................. GGTGCATGCCGCCCGGCCGCAATGCCTCCGA 10193 30 100.0 31 .............................. GGTGCATGCCGCCCGGCCGCAATGCCTCCGA 10254 30 100.0 31 .............................. GCATCGGCACCCTGCGGGGCACCATCCCGTA 10315 30 93.3 31 .................T...........C AGCCGCGGCCATCGTCCCCGGCGGCACGGAG 10376 30 96.7 31 .............................A TCAGCTCGTCCACCCACAGCAGCTTCTGCCG 10437 30 93.3 31 ....................T........C TCTCGTCCTGGATAAGCGAGCGGATCGCACC 10498 30 83.3 0 ...........T...A...A.....C...T | ========== ====== ====== ====== ============================== =============================== ================== 10 30 95.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCACGACGACAGAAGACCGATCGCCGGACACCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTGCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACTCACGACGGCGACCCCACCACCCCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCCAGGCGAGGGGTCGTTGTTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAACCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACATGTAACCACTTTGCCCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGCAAAACCCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCGCGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCACGCCCCCTCCCCCGTACCTCATGCAGATCGGGTACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //