Array 1 5584-7076 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVL01000120.1 Salmonella enterica isolate STY163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5584 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5645 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5706 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5767 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5828 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5889 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5950 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6011 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6072 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6133 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6194 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6255 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6316 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6377 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6438 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6499 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6561 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6622 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6683 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6744 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6805 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6866 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6927 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6988 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7049 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 156504-154539 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVL01000002.1 Salmonella enterica isolate STY163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 156503 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 156442 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 156381 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 156320 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 156259 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 156198 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 156137 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 156075 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 156014 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 155953 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 155892 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 155831 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 155770 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 155709 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 155648 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 155587 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 155526 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 155465 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 155404 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 155343 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 155282 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 155220 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 155117 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 155056 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 154995 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 154934 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 154873 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 154812 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 154751 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 154690 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 154629 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 154568 29 96.6 0 A............................ | A [154541] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //