Array 1 691-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEP01000127.1 Coprococcus catus strain AF45-17 AF45-17.Scaf127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 690 32 100.0 44 ................................ CAGTAGAAAGATATTTGATGACAACAGCCCCAACAATTAAGTTC 614 32 100.0 42 ................................ AAAATATAACATTCCTTATACTATATTAAAAGAATCAGGTTT 540 32 96.9 39 ..........................T..... CAAAACTGCAAGACAAGATTCCAGAAAAATGTTTAGTTT 469 32 96.9 40 ...................T............ AATATGGCAAGAAAACGAATGGTAACTAGAACGATTGTTT 397 32 96.9 41 .............A.................. AGACAAGGGGTTATTCTTTTCTGATAAGTTATAACACGTTT 324 32 100.0 41 ................................ CCAAAGCCAAAGAAGGGCTACTACATAGCAAAAATTTGTTT 251 32 100.0 36 ................................ GTCATGGGCGAGTTTGTTTGTTACTCTTTTAAGTTT 183 32 100.0 43 ................................ TAGGTGAACGAATGCGGAATGAATAAAACTGAATACATAGTTT 108 32 96.9 39 ................T............... GGTTTAAAATCTAATCTGATAGTTTATTTTCATAAGTTT 37 32 93.8 0 ................T..............C | ========== ====== ====== ====== ================================ ============================================ ================== 10 32 98.1 41 CCGTCCCCTCTCGGGGCATCTTATTTCCAAAT # Left flank : TTTTATT # Right flank : CGTGAA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCCCCTCTCGGGGCATCTTATTTCCAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 3063-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEP01000072.1 Coprococcus catus strain AF45-17 AF45-17.Scaf72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3062 30 96.7 34 ...............T.............. ACATATATCAGAGGTGTTGACTTCTTAGGTTACA 2998 30 96.7 36 ...............T.............. GTCACCGCTGTTGCAGTCACCGCTGTTGCAGTCACC 2932 30 96.7 35 ...............T.............. TTGCCGCTTCATCCTCTGGCAACTTATCCTTGATA 2867 30 96.7 36 ...............T.............. AACACAAAGAAAGGACGAAAGGCTGCATGATTGATT 2801 30 96.7 36 ...............T.............. CCCTTTTCCTTTCTTTGCGTGTTGGTGTGCCTTTCT 2735 30 96.7 37 ...............T.............. AATGATCAGACCGTCAGTGTTGGACTGAATCAGTTCA 2668 30 96.7 36 ...............T.............. ACGGGTGAAGAAGATCTTTTTAGAATTACGATAACA 2602 30 96.7 37 ...............T.............. TCAGATAGATACTCTTTTCGTCTCCGTCGCCCAGAAA 2535 30 96.7 36 ...............T.............. GACAGAAGAAGAGCTGATTAACATGATGACGGCAGA 2469 30 100.0 37 .............................. AAAAACGACAATTGACAGCATAATAAAAGAGCCGCCC 2402 30 100.0 37 .............................. GTTTCTCTTGTTCCTGTTGTTCCGGCAACCGTTCGCC 2335 30 100.0 36 .............................. TATCTTCAAACGCTCTGGTCATGCTCTCCACAACTC 2269 30 100.0 38 .............................. TATTTTTACACATACTTTTACAACACTGTGGCCAATAC 2201 30 100.0 36 .............................. GAACATGGACGGAATCTATGTCAATCAGAAGCTGAT 2135 30 100.0 37 .............................. TTCTCCGGTTATTTTATTCAGAGCGATGTTCAAAGCC 2068 30 100.0 37 .............................. GATACAGGTAGCCGACGCTATTCTTTACAGCTGCTTA 2001 30 100.0 35 .............................. CATCAAGACTAATATCATCATGTTGATTTTTCATT 1936 30 100.0 39 .............................. TCGGATAAACAACCTTTGTTACAAGACATTTATCATCCA 1867 30 100.0 37 .............................. TAAATTAAAGGAAGAGAAAGACGATCTTTCGGGAAGG 1800 30 100.0 37 .............................. CAATTCGTGAGGGTAGCAATGCAGCAGGGAAAACTCC 1733 30 100.0 35 .............................. ATATCTACGCATTATACGCAAAGGACGCAGTTGTT 1668 30 100.0 37 .............................. ACCTTTACCGGAGCGATGACGAGTTCTGCTGCAATCA 1601 30 100.0 37 .............................. CAAGTTCAGCCTGGACGGCGGCAACCGGTTATATTTC 1534 30 100.0 35 .............................. GAATGAGAAGAACAGCAGGAAGGAATGTGAACGGA 1469 30 100.0 39 .............................. CTATTTTCCTTATATGAAATAGGATGGCCGGTTATTTCC 1400 30 100.0 35 .............................. ATTTTCTTCATAGACAGGAACTTCTGTTTCATGTC 1335 30 100.0 37 .............................. TATCCGCAAAAAAGAATGACCCGGATTCAGAACTCGC 1268 30 100.0 36 .............................. CAGGCAGCGCAGGCAATTCCAGTGACAGCAGTTGCA 1202 30 100.0 38 .............................. TGCGTCGATGATAGCGTCAATCGGGTCGATTCGTTCTG 1134 30 100.0 36 .............................. CTGACGGACAAAGTGATCGTAAAAGCACCGGACACA 1068 30 100.0 35 .............................. ATGCATTCGCAGTGATTTTTTACAATGACGATTTT 1003 30 100.0 36 .............................. TCGCTTCAACATTCGGTCTTGTGAGGTTCTGTGAAG 937 30 100.0 34 .............................. CCGTTTCTCTTTCCAACAACGAGAAAAATCGCCC 873 30 100.0 39 .............................. ATGAGAATATGGTTGCGGAGCCATCTGTGGGAAGAACAG 804 30 100.0 37 .............................. GTCATAGAGACAGAGGAGCCGCCGGTGGTAGTGGCCA 737 30 100.0 36 .............................. TTATCACTGGCAATCATGCCAAGCTGCTCCATGGCC 671 30 100.0 37 .............................. TTTATACTCACACTTACGTCTGACGATTTGGCGTAAT 604 30 100.0 38 .............................. GGACTTAAAATAGCTGTAGCTACGTGCTTTGAAATCAT 536 30 100.0 35 .............................. AACGGAGGCAGCAGAAACAAGGCAGAGGCGGTCAA 471 30 100.0 38 .............................. TTAGGATCATTTATTTCTAAGATATGGGATGACACATC 403 30 100.0 36 .............................. GGGAAAGTTCGCACGGTGCGCGATCCCGCCAGTATA 337 30 100.0 37 .............................. CTTGAAATGCTAATGAACGCTATCTATGTACAAGCAA 270 30 100.0 36 .............................. GAATTACACATGGATGGTCAACAGGTTTTAGGAATG 204 30 100.0 35 .............................. GTCGAATGTGACAGTTAAGATGTACGCACAGTCGG 139 30 100.0 37 .............................. ATGGCATTAGCAGGAATCACAATCATGATTGGAGGAA 72 30 90.0 0 .......................GGA.... | T [51] ========== ====== ====== ====== ============================== ======================================= ================== 46 30 99.1 36 GTATTAATAGAATCAGATTGGAATTTAAAG # Left flank : CGAAGCAGGACAGAAACGTTGGTCCCGTATCTTTAAAATTTGCAAGAAATATTTGTCACATATACAAAATTCAGTTTTTGAAGGCGAAATATCGAAACCTCAGCTGATGCAGTTGAAAAAGGAAATGCAACCGTATATAAATGAAGAGCTTGATTCAATTATTATTTTTAAAAGCAGGCAGGAAAAATGGCTGGATAAAGAATTTTGGGCAAAGGAGGATGATAAAACAAGTTTTATGTTATAATAGATGGTGAAAAAGATGTCTGTATGGATTTTCTTCAATGGGCATCGGAGAGAGTGAGATGAAGGTTAAGTTTTTTAATTGTCGACCTGTAATAATGCAAAAAGTGCAAAGGGTCGACAGAGGCAAAAATGCAGATAGAATCAGGCAACTGGAAATAATGAAGTTTAAGAGGTTAAGGCATACAGATGTTTATTTCTTAGGTCGACAGAAATAAGTGTTGTAACCTGTGGTTTTAAAGGTGTCTTTGAACACGGGG # Right flank : GAGTACAGCGGGAAAGTGAAACTGGCAAGGAAACCAGAAAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAATCAGATTGGAATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 18024-17771 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEP01000053.1 Coprococcus catus strain AF45-17 AF45-17.Scaf53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 18023 34 100.0 38 .................................. ACAAACTAGTTGTCGGCGTTGGCTTCTTGAGCTTCCTG 17951 34 100.0 40 .................................. ACGATTGATAGTCCCGGAAGTCAATGATATTGTCTTTTTT 17877 34 100.0 39 .................................. TAAAAAATGGTAAACGCTCTATTAAAAAATGACTTGTTA 17804 34 82.4 0 ......C.......AC.....TC........C.. | ========== ====== ====== ====== ================================== ======================================== ================== 4 34 95.6 39 ATTTGGAAATAAGATGCCCCGAGAGGGGACGGAA # Left flank : T # Right flank : TTTTATCGTTACAAAACGATGAAAGGGGGATGAGTACGTGAGTCTACTGTATGTGAATGAAAATGGAGCGCTCATTGGTATTGAAGGCAACAAATGTGTGGCGAAGTACAAAGATGGCATGAAGACTTTTATTCCGATTGAGTCTTTGGAAGGTATCACGATTATGGGGCAGTCGCAGGTGACGACGAAATGTATGGAAGAGTGCATGATGCGTGGGATACCTGTGACTTATTTCTCAAAAGGCGGCAGATATTTTGGGCGTTTAATGTCCACGGGCCATGTGAATGTTGAAAGACAGCGAAAGCAGAGCGCATTGTATGATACGGATTTTGCAGTGGAACTTGGGAAGAAAATTTTGAGCGCCAAGGTGAAGAATCAGAGTGTGGTTTTGCGGCGATATGAAAAGAGTAAGCATAAGACTCTGGAAGAGGAACAGCAAATGATGTCGATTTGCCGTAACCGTATTCTTACAAGCAAAAAGATAACGGAGATGATTGGTT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGGAAATAAGATGCCCCGAGAGGGGACGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 186-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEP01000060.1 Coprococcus catus strain AF45-17 AF45-17.Scaf60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 185 35 100.0 37 ................................... ATTGTGTGACCGTCTTCAATCATTTTTCTAATTGCTT 113 35 100.0 37 ................................... TGTTGATTTCAACCAAGAACAATATAAAATTGTTATC 41 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 100.0 38 TTTGGAAATAAGATACCCCGAGAGGGGACGGAAAC # Left flank : CAAAGACGATTATCTATGATCTTTTCCAGCAGAAAGAAGCTGTCCGGGTAACAAAGGATATCTTCCGAAAGACCAATGTGCCTCGGGAGCATAAGCACGACAAGGATATAGGCCTTGGTGTGTCACCCCATGTGCTGAAGTGTACAAAGTTGAATGGGAAAAAGTATATGATGGGACAGTGTGAATTAAAGCTGCAGGTGATGTAAAAAAGCAGTTGTTTGGTGAGAAGGAACAGTCAGTCAATAGGAGATGCGAGAATGGAGGATTGACTGACTGGTTGCTTTGAAAATATCAGATTTCAATGCAAATATGGGAAATATGTGTTAAAATAGGTGTGTGCAGCGGTTCATTAGAAAAAAAGAAAATTTTGCCGCGCACCGCATAAATACTGCATTTGGAGGCGATTGTGTATGTTAGATATAAGAAAAATATACAAGAAAATGATTTGCCACGCAAAAGAGTCAGAAAAGCCAGCAAAATAGCGGGCTCTGGCGGGCAGT # Right flank : CTACGCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGGAAATAAGATACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //