Array 1 2092-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWS010000001.1 Erwinia amylovora strain 3515-1 Ea_3515-1_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2091 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 2030 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1969 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 1908 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 1847 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 1786 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 1725 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 1664 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 1603 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 1542 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 1481 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 1420 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 1359 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 1298 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 1237 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 1176 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 1115 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 1054 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 993 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 932 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 871 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 810 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 749 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 688 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 627 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 566 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 505 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 444 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 383 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 322 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 261 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 200 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 139 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GAGTAATTAATGATTCTGAAATCTCTCTTAATAGTGTTCCCCGCGTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-3768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWS010000033.1 Erwinia amylovora strain 3515-1 Ea_3515-1_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 49 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 110 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 171 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 232 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 293 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 354 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 415 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 476 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 537 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 598 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 659 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 720 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 781 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 842 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 903 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 964 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 1025 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 1086 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 1147 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 1208 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 1269 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 1330 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 1391 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 1452 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 1513 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 1574 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 1635 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 1696 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1757 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 1818 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 1879 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 1940 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 2001 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 2062 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 2123 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 2184 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 2245 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 2306 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 2367 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 2428 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 2489 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 2550 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 2611 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 2672 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 2733 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 2794 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 2855 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 2916 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 2977 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 3038 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 3099 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 3160 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 3221 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 3313 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 3374 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 3435 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 3496 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 3557 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 3618 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 3679 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 3740 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 61 29 99.3 33 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GAGCGGGGATAAACCGCCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGAG # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12808-15828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWS010000033.1 Erwinia amylovora strain 3515-1 Ea_3515-1_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12808 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 12869 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 12930 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 12991 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 13052 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 13113 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 13174 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 13235 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 13296 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 13357 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 13418 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 13479 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 13540 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 13601 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 13662 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 13723 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 13784 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 13845 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 13906 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 13968 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 14029 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 14090 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 14151 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 14212 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 14273 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 14334 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 14395 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 14456 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 14517 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 14578 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 14639 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 14700 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 14762 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 14823 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 14884 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 14945 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 15006 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 15067 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 15128 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 15189 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 15251 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 15312 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 15373 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 15434 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 15495 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 15556 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 15617 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 15678 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 15739 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 15800 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25292-25620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWS010000033.1 Erwinia amylovora strain 3515-1 Ea_3515-1_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25292 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 25352 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 25412 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 25472 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 25532 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 25593 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //