Array 1 917914-918185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075109.1 Salmonella enterica strain CFSAN060807 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 917914 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 917975 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 918036 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 918097 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 918158 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTACAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 928412-930578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075109.1 Salmonella enterica strain CFSAN060807 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 928412 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 928473 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 928534 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 928595 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 928656 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 928717 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 928778 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 928839 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 928901 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 928962 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 929023 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 929084 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 929145 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 929206 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 929267 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 929328 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 929389 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 929450 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 929512 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 929573 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 929634 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 929695 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 929756 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 929817 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 929878 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 929939 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 930000 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 930061 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 930122 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 930183 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 930244 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 930305 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 930366 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 930427 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 930488 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 930549 29 93.1 0 .............C.A............. | A [930576] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //