Array 1 42121-39127 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDX01000012.1 Bifidobacterium longum strain APC1477 contig0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 42120 35 100.0 37 ................................... ACTTGAAATGGGCGGCCTACGCGCTATGGGTGAGACG 42048 35 100.0 36 ................................... ATCCGGTCATTAACGAGATGACCCAGCAGACCAATC 41977 35 100.0 37 ................................... ACGTTAATGGTGGACATCAATGCTTGCGCTGTCGGCT 41905 35 100.0 35 ................................... AGCCTCGTACACGGTCGGCCCTTTCGGCACCGGGT 41835 35 100.0 38 ................................... ATTGGGCCGGGACTACGGCCCCTCGGATATTGTCCACT 41762 35 100.0 38 ................................... ACCGTATGGGGGTATGAGGGCGAACGTCTGGACAGTAC 41689 35 100.0 37 ................................... ACTGATTGCAGATTCATACGTCGTTGATTCGACATGC 41617 35 100.0 36 ................................... AGTGGTCGGCCAGAAACGGTTCGTGGCCACGATGCG 41546 35 100.0 37 ................................... ACCGCAAGGTTCGCCACGCGATCGCAAAAGCTCTTAA 41474 35 100.0 35 ................................... ACCGTCGAAAAGACAGTAGTTCAGGGCGGTGTACG 41404 35 100.0 36 ................................... AGCAACGAGGCCACACCCACCGCACAGGCCGGCGAC 41333 35 100.0 38 ................................... ATTCGACTTTCGGTAAAGCAATGGCGCAGGTCATGAAA 41260 35 100.0 37 ................................... AGTCATGACATGCCCCGGATACTACAAGCTCGAAAGC 41188 35 100.0 36 ................................... ACTGAATGTCGTCAACAATGGGTACACGGTCACCGG 41117 35 100.0 36 ................................... ATTCGGCGGTTTGAAGAACGCCGCGAGCGGGCTTAT 41046 35 100.0 37 ................................... ATACGTGGGCGACGTTGTAACCTGCCGCTAACCCAAA 40974 35 100.0 37 ................................... ATCCGGCACGGGCGTGGTCAACACGTGGAGTCCAATC 40902 35 100.0 41 ................................... AGACCTGCTCAAGCGCGGCCTCATCCACCAGATGAGCATCG 40826 35 100.0 37 ................................... AGGCGATGCAATCGCAGTTCGGATGCCTCTCGAAGGG 40754 35 100.0 36 ................................... AGTGGTGGCCATGCCTTGGATGAACCGCAGGGCCTG 40683 35 100.0 38 ................................... ACAGTGGACGACCACGCGGGCCGCCAAATCGCCCTTAC 40610 35 100.0 37 ................................... AGCTCAGCTGGAGACACTGCCGGTACCCGACACGGTC 40538 35 100.0 36 ................................... ACACGTCAAGGACATCATCCAGGACACCAAGTGGTT 40467 35 100.0 38 ................................... AGTGGCGTCCGCTAACGGTAAGTGTGTTGTCGCCTATC 40394 35 100.0 39 ................................... ACAGCACGGCGAGCTCATCGGCCGCATCACCAGCGCCGA 40320 35 100.0 38 ................................... AGGTTTGTGGATTGCCCAGTACGCCAACATGTCGCCGA 40247 35 100.0 37 ................................... GGGCGAGGCCATGCGCCAGTACAGCGGTACCGGCGTG 40175 35 100.0 39 ................................... GCGCTAAGGATATTGCAGACATGGTGGATCGCGTTGACG 40101 35 100.0 37 ................................... GGCATTGAGCGCCGCGAACGTGTCGTGGCTGCCGGCT 40029 35 100.0 37 ................................... GTACCGAGTTACAGAGATTAGGGCCACGGCCTGCAAG 39957 35 100.0 38 ................................... GCGGGCGCGATAGGCGACAACACATTTGCCGTTAGCGG 39884 35 100.0 36 ................................... GGAGGACGGCACGGCGTTGTTCCTGCGCTGCTCGGC 39813 35 100.0 40 ................................... GACGGGCCCAGTGTTGGCGAGCATGGGTTTGGCGGATGGT 39738 35 100.0 37 ................................... GACGCAAGCGGCAGTGTCGTTAACGCCGTAAGGCGTG 39666 35 100.0 37 ................................... GACGCGTTACGTCGAGGTGCCGGACTCCAAGACCGAG 39594 35 100.0 37 ................................... GATGTCCACCATCACAGTGAAGTTCGTCATCTGGGCG 39522 35 100.0 37 ................................... GGACAAGGTGCTGCTGGTGAAAAACGGCCGCCTCATC 39450 35 100.0 38 ................................... GGAGCCGCATCTCTATATCCGTATCAAACCGCTCCCGG 39377 35 97.1 38 .....................A............. GGTGGTAGTTGCGTACCGGTGGCGCAGACTATGCGGTG 39304 35 100.0 37 ................................... ATTGGCACCGTGAGGCCATTACGGCAAGAGAGGCGCG 39232 35 100.0 36 ................................... ACTCGCCCAGACCGGCAAGGACGCCGGCGACCACTT 39161 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 42 35 99.9 37 CTTGCATACGTCAAAACGTATGCACTTCATTGAGG # Left flank : TGAAAAGCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGGCGGATGTTTTTTTGGACGGTCAGGCGGACAGTCCAAGGTGTTTGCGGTGTTGCATGGGGCTTATCCAGTCCAGTGACTTCTTGATTCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGTGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCATACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCCATGTTAGAGGACGTAGCTGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACCATAAATTCGAGCCTGC # Right flank : GAGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCGAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAAACAGATAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTACCTGCAATCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTTGGTCTTCTCCCACGGGAACTCAACGTCGGTACGGCCGAAGTGGCCGTAAGCGGCGGTCTTCAGATAAATCGGACGTTTCAGATCCAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCTCGCGTCACACCCTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGGTCGGCAACGCCAATAGCGTAGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 244991-245335 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDX01000015.1 Bifidobacterium longum strain APC1477 contig0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 244991 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 245057 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [245063] 245141 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 245201 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [245249] 245249 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 245306 27 85.2 0 ..............C.....C....CG | GC,C [245324,245328] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //