Array 1 138278-138427 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788319.1 Corynebacterium sp. HMSC05D08 Scaffold282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138278 29 100.0 32 ............................. CAAGACCCGCGAAGGCTACACACGCCTCACCA 138339 29 100.0 32 ............................. GTCATCGCCGCCGACGCATGCCCCAGCTGACG 138400 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CTCAATTTCAATTTCGGCTGCATCCTCCCACCCTGCGGGGATGTCCATAGTGGGGCAGGTCCCCACGCCATCGAGGGAGGTCCAGATCTCTGGCATGATCGCCGCGATGCTTTCGGGAATCTCTGGGTTGATGCTCACGGAGCCGGTGGCGCGGTCTACGATGTAGCGACCATCGACGGTAGCGACGGTAGCGATGGCGGTTGCGGTGGTCATTTTCTTTTCCTTTCTTAGGGGCTTCCCCTTCCGAAAATGACTATACCGGGTATAGGGCTGCCATGCAAGATCAACGCGATAACCGCAGGTGACGACTATTTGCCACCACTTAACTTTCATAACCAGCACTATAGGCGCTATAGTAATGCTGTAAGCGAAAAGGCCACAAGCCCACACCCCCTGAAAGGAACCGCAATGACCAACCTTGAAAACCTCGCCTACACCAAATTCACCACAGACGACTCCTTCACAACGCACAATGTCGCTCACCTCGCCTACCATGACGG # Right flank : | # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9522-14658 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788332.1 Corynebacterium sp. HMSC05D08 Scaffold372, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9522 29 100.0 32 ............................. GCCTCGTCGGCTGAGATGACGGGCATTTCTCA 9583 29 100.0 32 ............................. AATCACCACAATCCTCGAAGGACAGCAATGAC 9644 29 100.0 32 ............................. GAAATCACCTACACCGAAAAGATTTACGACGC 9705 29 100.0 32 ............................. CTGGCACCGATGAAATCCCGCTCTACTACTAC 9766 29 100.0 32 ............................. ACGTCTGCGGGTGACGCGGCAGCCGCCATGAC 9827 29 96.6 32 ............................T AGTGGATTTTTTAATTCCCTTAGCGCTCTGCA 9888 29 100.0 32 ............................. GGGCCGCCGGGGGTCTCCGGCCAGTTGAACAG 9949 29 96.6 32 ............................T TGAGCGCACACCTATAGAGTAAAACGACGAAA 10010 29 100.0 32 ............................. GATCTGGGAGCATACCCACGCCACGGCATCAG 10071 29 100.0 32 ............................. AGGGCGCGTAGTTGGTCTCGCGTGCCTCGGTA 10132 29 100.0 32 ............................. GTGTGCGCAGCGTGAAGGTGTCGCCGCTGACT 10193 29 100.0 32 ............................. GAACGAGCGGAACATGTCGCAGGCGGAAGCGG 10254 29 100.0 29 ............................. GTGTGNNNNNNNNNNNNNNNNNNNNGACT 10312 29 100.0 32 ............................. GTCACGCGAGCGTCGTCCGGCAGAGGCTCGTT 10373 29 100.0 32 ............................. GGTGACGAGTTCTACCGGGTCAAGAGTGAGGT 10434 29 96.6 32 ............................T CGTCGGCGGTCCAAAGGACACGATGATATGGA 10495 29 96.6 32 ............................T CACTGCCCGGCTCGTAAATATTCTTCGAGCTG 10556 29 96.6 32 ............................G GGAACTCACCAAACTTTGGCAGCTGAATGGTC 10617 29 100.0 32 ............................. CGCCCCCACAGTCAGACCCGAATCAGACTGCA 10678 29 100.0 32 ............................. CGCCATCGCTACCGTCGCTACCGTCGATGGTC 10739 29 100.0 32 ............................. GCCGTAGCAACCGACATTGCACGGCTTTGCGG 10800 29 100.0 32 ............................. TTGGCTGGGTTTCTAGCTCGCTGCTATCGTCC 10861 29 100.0 32 ............................. ATATCACGCACAGCATCATGTGAGCGCAGATT 10922 29 100.0 32 ............................. CCCATATGACGAATACGGCCCCGAATGGCACG 10983 29 100.0 33 ............................. TTTGGGCCGGTGTGGAGTACGAGCGCCGCGTCG 11045 29 100.0 32 ............................. GCGTCCACAACGTGCTCGCTTGCTTGGATCAG 11106 29 100.0 32 ............................. GCCGAGGAAGCCGAGAACGAGGAAGCAAAAAT 11167 29 96.6 32 ............................A CTGGAGGATGTCAGGAAGGCGGTCACCTAGCG 11228 29 100.0 32 ............................. CGCGGGACCCTGGACGTGCCGTCCGTACTGCA 11289 29 96.6 32 ............................T CCGTGGTGGCGGCGTCCAGCAAAATCGCTGGA 11350 29 100.0 32 ............................. ACCTGGGCAAGAACCATATGACAATGCCTAAC 11411 29 100.0 32 ............................. TTCGATTCCCGCCGAGGTTACGGCAATGCCGC 11472 29 100.0 32 ............................. TAAGTTTCAGACTGCGGCGCTGCAGGCTATCG 11533 29 96.6 32 ............................G GACCGCTTCGCAAAGAGACTGAAGCAAGACGG 11594 29 100.0 32 ............................. CAAGACCCGCGAAGGCTACACACGCCTCACCA 11655 29 100.0 32 ............................. ATGCACTACACCGGGGCAGAAGCCTGTGCCTT 11716 29 100.0 32 ............................. ATTTCGCCCCACACCGCACCCCTATTGGAATG 11777 29 96.6 32 ............................G TAAATGAGCAACGAACTCGCACCAAACACCAG 11838 29 100.0 32 ............................. GTCATCGCCGCCGACGCATGCCCCAGCTGACG 11899 29 100.0 32 ............................. AATGGTTCGCGGGCGCTGCCCCACTCGGTGTA 11960 29 96.6 28 ............................G AAGTGNNNNNNNNNNNNNNNNNNNNCGA 12017 29 100.0 32 ............................. CAGAATCGGCTATCCATACTCGGCGTTGGCCC 12078 29 100.0 32 ............................. TAGCGCGGCAAAAAGATCTTCGCGCCATTCAA 12139 29 100.0 32 ............................. CAGCAGGGCGAGAATCGGTACAAGACGGAGTT 12200 29 100.0 32 ............................. GTGGGTGACCTCCGCGCGCTCTGTCGTGGACG 12261 29 96.6 32 ............................T CACTATTAATGGAAGTAACGCAAGTGAAGTAC 12322 29 96.6 32 ............................G CCCCGCGCTGCCCGTATCCGAGATCTTCTTCG 12383 29 100.0 32 ............................. AATGATTGATTACGAGTACCGCTCTGGGCATC 12444 29 96.6 32 ............................T TACTAGCGCGATAAACATTCCTTCGATGTATC 12505 29 100.0 32 ............................. TACACCGACTGGATGAAGCGCATGATTGCCTA 12566 29 100.0 32 ............................. CAACAAGGGCCGCACAGCCCTGATAGCGATGA 12627 29 100.0 32 ............................. TGTGACCGTGCCCTCGCGGTACTCGAAGCAGC 12688 29 100.0 32 ............................. CACCGCGATGATTAGTGCAAGTGCACTCATTC 12749 29 100.0 32 ............................. TCAAGCGTGTTATTGGGCTCGTTTGTCTGGTT 12810 29 96.6 32 ............................T AAGGTGCGGGGCCAACGCCCGGTACAGCCCCC 12871 29 100.0 32 ............................. ATATCACGCACAGCATCATGTGAGCGCAGATT 12932 29 96.6 32 ............................G AAGTCCCAGCTCACTACCGCATAGCAGATGCA 12993 29 100.0 32 ............................. TCGTGCCACTCTTCCTCATTTTCTGGTTTAAA 13054 29 96.6 32 ............................G TTGGCCCGCGTGGCGGCGTCACCCGTGTTACT 13115 29 100.0 32 ............................. ATATGTTCCAGCTTCGGACGTTACGGTGACAA 13176 29 100.0 32 ............................. GATAATGCGGCGTGCGCGGGCGAGGGAAGGCA 13237 29 100.0 32 ............................. AAACGCCTACGCACAGAGCTAGCGAGACTGCA 13298 29 89.7 22 ..........................NNN NNNNNNNNNNNNNNNNNCTGCA Deletion [13349] 13349 29 100.0 32 ............................. TTATACCGGGGCCACATTGATGGCTATGAGCT 13410 29 100.0 32 ............................. CGCCATAAACCGCCCTATACCGCCTTATTGCA 13471 29 96.6 31 ............................T TCCATTCTGGCTAAATAAGTGGGGATACCCG 13531 29 100.0 32 ............................. GCATCATCTCCAGATCGACGCCGGGGAACCAC 13592 29 100.0 32 ............................. ACTTGGTGGCTCGCGTGTGGGCTTCAAGGCGT 13653 29 100.0 32 ............................. GGGACGCCCGCTACGCAGCCCAATTCCACGCA 13714 29 96.6 32 ............................T AGGAAGGCGCTCCAATCTGGACGGCTTGGCCT 13775 29 100.0 33 ............................. CCCCAACCACCACAGAAAGGAACACCCACAATG 13837 29 100.0 32 ............................. GGGCTGTTGAGCAGGGCGTTTAACTAGGTTCG 13898 29 100.0 32 ............................. CCAGACTGAACCGCCCCCACAGTCAGACCCGA 13959 29 100.0 32 ............................. CACGTTCACGTGGCATCACAGCAGCCATTGGG 14020 29 96.6 32 ............................G TTCAGTCCCATCCTCCTTGTAATAGGAAGGCG 14081 29 96.6 32 ............................T TCGACATCATCACCGACGATGAAGGCAGGGCC 14142 29 96.6 32 ............................G GGGAAAGCCCCTAAGAAAGGAAAAGAAAATGA 14203 29 96.6 32 ............................T TTTGCTGCCATCAGCCACCGCCTTATCCACGT 14264 29 100.0 32 ............................. GCCATCAACCCATGCAGACCCCAGCACACGTG 14325 29 100.0 32 ............................. CCACCCTCAAATGTGGCAGTGGGTAGCAGGAG 14386 29 100.0 32 ............................. CCTTAAGGACTTCGAGAACGCGCCAGAGGGCA 14447 29 100.0 32 ............................. GCACAATGTCGCTCACCTCGCCTACCATGACG 14508 29 100.0 32 ............................. ATACACCGCCCTAGTGGACTTCCTCACCAATC 14569 29 100.0 32 ............................. CATAGCAGTCCCTCATTTCAATATCGGCCAGC 14630 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================= ================== 85 29 99.0 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTCAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACATTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788362.1 Corynebacterium sp. HMSC05D08 Scaffold80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 ............................G AAGTGGACCGCTTCGCAAAGAGACTGAAGCAA 68 29 100.0 32 ............................. CGGATCCGCGTCAACCCATCACATTTCGCCGA 129 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CTGACGG # Right flank : CCAGGTCCGCATCATAGTCAGCGGCGACACCTTCACGCTGCGCACACGTTAACGCACCAAACCACCGCACCGGCGGTGGTTATTTTTTTGCCCTCACCAACCCAGACTGAACCGCCCCCACAGTCAGACCCGAATCAGACTGCATTTCTACCCAAGTGGCACCGGCTGCACGCGCATCCGCCAAAGCCTGATCACGCTCGCGCTGCAACATATCACGCACAGCATCATGTGAGCGCAGATTCAACGCGGCGCGGCGTAAATTCTCCCTGGCGGCTTCTTTCTCCATACCTACAGACTATACCACCTATAGCGGGTGCGTGCGAATCAAAAACCCCAGACCTGTACGCGACCCTAGCAACATTGCCTTCCGACCCTCTGCGATGGTGGGGGGAGGGGGTTGTCCCCTGTCTTTTGTTGTTGGTTGGGTTTAGGTTTTGAGGCCTGGGTGTTGTTCTTTGGGGTATTTGGCGCGGTTTGCGCGGGTTTGGTGTCCTTTGCGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //