Array 1 16548-15010 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMP01000143.1 Actinoplanes lobatus strain NBRC 12513 sequence143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 16547 28 100.0 33 ............................ CGGGTAAGCGCCAACCCCGCGCCCTTCGCGGAG 16486 28 100.0 33 ............................ TGCTCGAGCAGGTCGACAAGGCCGCCAAGCGGT 16425 28 100.0 33 ............................ GTCAACCCGAACGGGCAGTGGGGGTTCGTCGAG 16364 28 100.0 33 ............................ TACGACTCGGACGGCAACGAGGTCTACCCGGAC 16303 28 100.0 33 ............................ CCGGTCACTCGGCGTCTTCACGGCGCAGGAGAT 16242 28 100.0 33 ............................ GCCGAAACCAACATCGACTACCTGCCCCGCTGC 16181 28 100.0 33 ............................ CGATGCCGTGTCGCACAAGACCCCCACCTGCGC 16120 28 100.0 33 ............................ CGGCAAGGTCACCCCGCAGCTGCTGGCCAAGTT 16059 28 100.0 33 ............................ CATCGCTCCGCGGTTCGTCCTGGACTGGCAGGA 15998 28 100.0 33 ............................ TCTCTTCCAGGTCGGGGGTCGGAGGGGTCGTTC 15937 28 100.0 33 ............................ CGTCTTGGCGGCGGCGAGGCTGGTGGTCTCCGC 15876 28 96.4 33 ....C....................... GGCGTGGATCTGGTGCACCGACACCAGCACGGG 15815 28 100.0 32 ............................ GAGGGCTGCTGTCGCATCGTCGTGTGCCTTAC 15755 28 100.0 33 ............................ GGCGTACCAAGACCGCCTGCACATGCTGTGGGA 15694 28 100.0 33 ............................ GGACTGCTCCGGCAGCATCCGCAGCGCCTTCCA 15633 28 100.0 22 ............................ GTGCACACCCTGAGCTGAGCCA Deletion [15584] 15583 28 100.0 33 ............................ CGGACCAGGGCGTTTCATACAGCGATGGCCGGG 15522 28 100.0 33 ............................ GGCGTGGGGGCCGCGGATGGACGACGTCATGCG 15461 28 92.9 34 .C.........A................ CTGGACCGGCCTGGCCTGCGGCTGCGAAACCGCC 15399 28 100.0 33 ............................ CCAGGCGCTGATCAGCCCCGTGGTTTCGGCTGT 15338 28 96.4 33 .........................C.. CTGAGCAACTGGCCGCCCAGGTGCGCAGATCAA 15277 28 100.0 33 ............................ CACGACACCACGATTTCACGTGAATACACCACG 15216 27 96.4 33 .....................-...... GGCCGCGGTCGTACTCCGCGCGGTACGGGAGCG 15156 28 96.4 31 ..............T............. GCCGCTCGTACTCGGCGCGCCGGCGCCAGGC 15097 27 96.4 33 ........-................... GGTGGCGAACGTCTACCTCGGGATCTGGGGATA 15037 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 26 28 98.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGCCGGCGCACTATCGCACACCGAAAACGCCCGCGTCGCCGGTCGAGCATCCAGCGCCGGCAGCATCATGCGCCGCATCGACGTCAAACGCCTAGCCATCCCCGTCCTACCCCTCGGCCAGCAGCGAGCCTACGGCCAAGCCTTCCAGCACCTAGCCGAATTCCAGGCAAGACTCCGCGAGGCCGCCACAACCGGCGAAACACTGGCCCGAGAAATCAACGACGGCCTCTTGAAAGGGTCCCTCACAACCGGTGCGGATTCCTGAACAAGCGGATGATGGCCAGCGGCCAAGAAGGAGACATTGGGATGGCCGCAACTGGCGGACCCCCTTCGGCACCCAGCAGTGCAGCAGGCCGCCAACGAACCTCGTAGGGTTGTCATGACGGTGCTGCTATCGACCGTACGGTCGGCCGACAGGGCAGGCCAACGTAGACTATGGCTGGCCCACCTAAGTGAACAAAAATCGAGTTCTTGATCTCCAAGACCGCAGGTCAGTTAGT # Right flank : GCTGTAGACGCCGGTGGTGCCGTGCGACGCCGTCTGCTCCTGTCAACGGTCAAGACGAAGTGGATCTGGCACGGCCATGGTGATCGGCGGACGTTGATGTCAGTCGGCGAGGATGATCCGGTGGCGGAGCAGGTCGGTGTTCGCGCGGCCGTACATCTGTCGTTTCAGCATCTTTATCCTGTTCACGGCGCCTTCGACGGGTCCGGAACTCCAGGACGTGGTGAGTCCGGCGGTGACGGCGGTCCGGTCCCGGCGAAGGCCGTTGGCGAAGGAGCGGATCTGCGGGATGGACTCCTGCTCGGCTCGGGTGACCCAGGCTTCCAGGCGGTCGCCGCCGCGAGTGCGTAGCAGGTCGGTGAAGCCGTGGGCGAGGTCGCGGATGGTGCTGAGGTCGGGGCAGAGCTCGCAGAGCCGTTGGAGTTGTTCCTGGTCTTCGCTGGTGAGTTTGCTGGTCGGGCGCATGATCCGGCCGGTGATTTCGCGGGCTTTGGGAATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 32571-34552 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMP01000143.1 Actinoplanes lobatus strain NBRC 12513 sequence143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 32571 28 100.0 33 ............................ CCACCTGTCCGCGGTCGTCGACAACCCGGAACG 32632 28 100.0 33 ............................ CCGACGTGGATGACGGTGGCGATCGCCGCTGAC 32693 28 100.0 33 ............................ GTGTCGTTGATCTGACTGTACGAATGGCCGAAC 32754 28 100.0 33 ............................ CCGCTACGTGACGATCGTGGGCCCGTCCTACGA 32815 28 100.0 33 ............................ CTGGCGCAACGTCGGCCTCGCGATGCGGTGGGC 32876 28 100.0 33 ............................ GGTGGAGCGCATGACTTCTGCCAGTGAAGGGAC 32937 28 100.0 33 ............................ CGGTTCTCACAATCAATTCGTCTCACCCCCTCT 32998 28 100.0 33 ............................ GGAGCTGCGTGATCGAGGCCGGTTGCACGAGAT 33059 28 100.0 33 ............................ GACGCGGATCAGTTCGGGCAAGAAGTCATAGCC 33120 28 100.0 33 ............................ CCAGATCCCGGCCATCCCCGGCGGCGAAGGCGG 33181 28 100.0 33 ............................ GGCGATGATCCTGGCCGACCTGCGCGGCCCGCT 33242 28 100.0 33 ............................ GCTACACCGGGGGACGGCGCGCCAACGGACTAC 33303 28 100.0 33 ............................ CTCTCCCGGCGTGTCGCAGGATCGCCACCGTAA 33364 28 100.0 33 ............................ TCAGAATGCAGACCCGACCCGTCCGGAACGCCA 33425 28 100.0 33 ............................ CTCCTACGGCGGCGCCGACGTCTCCGCTGGCCG 33486 28 100.0 33 ............................ GTCCACACCGAAGGTGGCGGGCTGGTCGAACGC 33547 28 100.0 33 ............................ TTCGAGTGGGCACCGGTGGCCGAACGATCCGGC 33608 28 100.0 33 ............................ CTTCGGCAAGAGCGCGTCGAAGCCGAAGTTCAT 33669 28 100.0 33 ............................ GGTGCCCGCGTTCGGGTTCGGCACGAACTGGTC 33730 28 100.0 33 ............................ TCCAGGGGGCGTGTTGTCAGTGCTCACGGGTCA 33791 28 100.0 33 ............................ GGTGTCTGACCTATCCGGACAGAAAGTGGCCCC 33852 28 100.0 33 ............................ CGCCAAACGGTACGCCAATACCGTGCACTACTC 33913 28 100.0 33 ............................ GTCGACGTACCGGAAGACGATGTGGGTCAGGCC 33974 28 100.0 33 ............................ GGCCATGGAGGCCTGCGGGTCGTCGGACTTAGC 34035 28 100.0 34 ............................ GTTCCGCGCGGGTGTGCAGCCGCATCAGGAAACC 34097 28 100.0 33 ............................ CGCGCCGGGCCTGATCGTGGTGGTGGGCCAACC 34158 28 100.0 33 ............................ TGGGCGGGGTGGTGTCTGCGGGCGCCGAGTCCA 34219 27 96.4 34 .....................-...... CGCGCCGGCCTTGACGACCTCGGCATCGGCGAGC 34280 28 100.0 33 ............................ CTGACCGCCTACACCGTTCGGATACTGTGCGAC C [34297] 34342 28 100.0 33 ............................ CGGCAAGAACGCGTGTTCAGCGAGGAACCACCG 34403 28 96.4 33 .........................A.. CACCGGTCAGTGGGTCACGGCGAACGAGGTCAC 34464 28 82.1 33 .......TTT.A.....A.......... GGCCACATGCGCGCCGACATCTACATCCGGGTC 34525 28 82.1 0 ...T..........CA.....A.....T | ========== ====== ====== ====== ============================ ================================== ================== 33 28 98.7 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : CCGGCTGTGGGACGAGGGCGGTTTCGAGGTCACGGCCGGCCGCAATTATGCCGACGTCGGCGACGTGGACTTCTGATGACCGTCATCATTCTCACCGCCTGCCCACCAGGGCTGCGAGGGCACCTCACCCAATGGCTGCTGGAGATCTCCGCCGGCGTGTACGTCGGCCACATCAGCACACGAGTCCGCAACCGCCTCTGGGCGCGGGTTGTCGACATGGCCGGGCCCGGACGAGCGCTACTGGTCTACCAGAAGCGCGGCGAGCAGAAGCTCTCCTTCGAGGTACACGACCACCACTGGGAACCGGTCGACCTGGACGGCGTGACACTGATCCGCCGTCCCGGAAACGCACCGTTCAATCCGGCAGCTCCGACCGGCTGGAGCAAGGCCGCCAAACGCCGCCGGTTCGGGCGCCCCGGCCGTCCAGCGTAGGCTGTACCCAGCGAGAGCAAGTGAACAAAATCCAGGATCCTGATCTTTAACGCTGCAGGTCAATTAGT # Right flank : TTGGACGGCCGGCACGCTCACCCGTGGTGGGGCCTGCTCTCCGGCGTTCGACCTCGACACGAAACCATCGTCTCCTGCTCACCCAGCAGCCGCAGCACCCCGTCGCCCCCACAGGCCACCTTCAGCTGATCGCCGGGTTACACCGGACACCGGTGGTCAGTTGCCGCTGCTTAAGCGCGGCCGGGGGCCGCATTAGTATCGGATAGCCGGCCGGGGCGATGTCCGAGATCCTCGGACCTGCGCAACCGTGAGAGCGATGACCTTCCCGGGGTCGGCCGCGTCCTCGGTGATCCGGCGGCGGACGGCCAGGACCCCGCTGACCAGGCTCGCCTCCGGCCATCTCCCATCGCCGGGTTCGATCGAGGTGAGGGTACGCCGAAGGCCGTGAACCACCCTGTCCAGCCCCGCGGGTCACGCCTGGCGACCGTGCGGCGGGCGCGTGCCACCAGCGCGGTCGACTGGGCGGCCTCCCGGAACGTCTGAATCGGGAGTGTCAGCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 38739-40428 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMP01000143.1 Actinoplanes lobatus strain NBRC 12513 sequence143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================== ================== 38739 29 100.0 32 ............................. AACATCAGCGAGCACTGCACGGACTCCAACTG 38800 29 100.0 32 ............................. GAGCCGACCGCCAGCGTGCGCCTGTCAATCGT 38861 29 100.0 32 ............................. TGACCGATGAGGCTGCCGCGCTCGGACTGGCT 38922 29 96.6 32 ............................G GCGGGTATGCAGCGGGCGAACGCCAAGGCCGC 38983 29 96.6 32 ............................G GGAACCTGGTCGTCGCCGGGAACATCACCATT 39044 29 100.0 32 ............................. ACAAACCAGTCCATGCAGGCGATCCGGCGAGC 39105 29 100.0 32 ............................. GGCGTCTCGCCGGCCCGGGACCGCGGTGCCGA 39166 29 96.6 32 ............................G TGGTCGGCGATCTTCCCGGGAATGGTCTTCAG 39227 29 96.6 32 ............................T CACTCTCCGCAGTCACTGGGCTGGCCGGTCGA 39288 29 96.6 32 ............................G CTGAATCCGTCGGTCAAAGACCCGAACAAAAT 39349 29 96.6 32 ............................A CGTCCAACCACGGGGCCGTTTCTTGAACGGAT 39410 29 96.6 32 ............................G GTCGCGAAGCTGATCACCGACCCCCGGCCGGG 39471 29 96.6 32 ............................G GATCATGGAGCACGCCCACCACACGCTCGGCC 39532 29 96.6 32 ............................T ACGGAGTGACCAGCACATGACCCAACCCATCA 39593 29 100.0 32 ............................. ACCTGACCGGCCCGTACCGGGTTGCCGACGTG 39654 29 93.1 32 .........................T..G TACTGGTCGGTGGTGCGGCCCAGCAGCTGCAG 39715 29 96.6 32 .........................T... ACGAGGTTCGCGACGCCGACCGGGTGCTCACC 39776 29 93.1 32 .........................T..T GCGGAACACTCGGCCCGGCAGGTCCGGGTCAT 39837 29 93.1 32 .........................T..G TCGAGCGAGTCGCCGGAGGTGTTGGAAACCAG 39898 29 96.6 32 .........................T... CGTGCGCCGCTGGGACCGGCTCGGCCGCCGGT 39959 29 96.6 32 .........................T... TTCTTCGCGCTGACGGAGACCCGCTGCGAGCC 40020 29 89.7 33 ..........A..............T..G GTGGCGGATCCCGCGCCCGCGGCGGTAGCCAGC 40082 29 96.6 32 .........................T... TCTGGCTCGGGGCGCGGCCTGCTCAACGGGCC 40143 29 93.1 32 .....................G...T... TGTTTGGAGGTGAGCAGGCCATCCTGGACCTC CA [40155] 40206 29 86.2 165 ......................GC..GA. GGCCCGCATCGCGACAACGACCGTTGCCGGGGGGATCACCCGTCCGCGCCCCGCGTGCGGGGAGCAGTTCCTGATCAAGCGGGAGCTGACTGGGGGAGTGCGGTTCACCCCGCGTGCGCGGGGGAGCAGATGAGAACGAAAATTGTTTCCATCAGGCCCATAAGG 40400 29 69.0 0 A..AC.......T.........GC..TGA | ========== ====== ====== ====== ============================= ===================================================================================================================================================================== ================== 26 29 95.1 37 CTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCACGTGGCCGCGCCGTGATCGCGCACCTCGAACGCACCCGGCTCTGGCCCGGCGCCGCCCGTGATGCCCTCGACGCCTGGACACGCTTCCTGCGCGACCCCTATCACCGGCTGTTTGACCCGGCATCCGGCTGCGGGGTCCTTGCCTGCTGCCCCGATCCGATGGAGCTACGCCGCCTGCTGCACATGGTCAGCCAGGCCCTGCCACGACGCGATGCCCGCGAACTTCGCCGTCATCTCGCTGAACTGGACGAGCAGTGGTGAAGCTGGGGCATGGCGAAACTCGCAGCACCACCCAACACGATCACGATTTGTGCACTTTGTACGTACCTGGCGCTCGGGTTCTAGACTTCGTGCCAGAGCTTGTTCTAATCGACCAACGTCACGCCGCGAAACGCCGCTGGCTCGGAGGTCCCGGCCGCCCAGCGTAGGCTGTACCCCAGCAAAGGCAAGTGAACAAAATCTAGGACCCTGATCTTCAACGCTGCAGGTGAATTAGT # Right flank : AACGTGCTGGATCGCGGCGAGGACGGCCAGGGGATCACCCCCGCGTGCGCGGGGAGCAACTCCACGGTACGGCAGCCGTGACAGATGATGATGGATCACCCCCGCGTGCGCGGGGAGTAGGAGGCCCGCACCGACAAGACCGCGACGGGCAACGGATCACCCCCGCGTGCGCGGGGAGCAGTAGCGGCATACCGCGCCCCTCTGAGGTTCCACCCCGGGACCGGACACCGGAGTTTCATGCCGCGAGGGCGATGGGTGGACGATAACAGACACGCGCTTCGCGTGGTGTCTGATAGTTCGTGGTGGAATGCAATCATTGGTTGTTGTAGTAGTTGATGCAGGCGAACACCTTCCGGCGGGCCTCGGCACGGGTGGCGAAGACGCGGGTGCCGATCTCGGCCTTGAGGCTGGCGAAGAACAATTCAGCGCCAGCGTTGTCGAAACAGGACCCGGTACCGGCCCATTGGCGGCCGCATGTCGAGCCTGGTCAGCGTGGCGCG # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.48, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //