Array 1 64263-64535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028271.1 Mixta intestinalis strain SRCM103226 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64263 29 100.0 32 ............................. CCTGGCAGGCGCTGCGTAATATGACGGCTGAC 64324 29 100.0 32 ............................. GCTCCTGTCCTCCCGGCTGTGCATCTTCTTAC 64385 29 100.0 32 ............................. CCTCAGTCGCGATGACACAGGAACGCAGTACG 64446 29 100.0 32 ............................. CATCTCGAACAAATCAGGTCAGACCTGTACAC 64507 29 86.2 0 ........G.................ATA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCTTTTTATAAATAACGGATTGGCTAATACCTTATTTTTATTGTGAAAAATATATGTTTCGAACAGAGCTTTTGAGAATGAATTAAATATTTCAACTGGATGTTATGCAATTATATCATATTAATTGCTCTTTATTAATTGGTTTCTTAATAATAAAGAAAATAACGGTCTTTTCTGGTTTTCATTTATAACCTATGCGCAGTTAATTGACTAAAAGTAAAAATAAACTTTCATAAATCCTTTGTTTTTTTAATCTGAGATATGTGTTCATTAGCGTATGAAATTTGCATGGTAATATTGTCGTTTGTAACGCTAATTTGATTTTTATTGCCGCTTTACCTTTTGTTTTTTAAAGGGTTTCGGTGGAGTAGAAAAATTAAAAATCAGCTTTTAAAAATTTCTTTCATTTCAAAGGCTTAGGGTTCTTTAAAAATACGGAAAGGTTGGTGAATTTTTAGGTGCTGTTTTTTTATTTATAAATCAGTAATATAATTTTAGA # Right flank : AAAAAAGAAGCCCGAAGGCTCCCTTTAATAATTTAGCTTTCAGTATGTTCCAGCGTAATATTCACCGGACGCTTTTTAATCCGCCAAAAATAAATAACCGTCAATATTATCAGCCAAATCAAACCGGCGATAAGCGCCAGACGCGTTTCTGCTACCGCACCTAACACTCCAATGACCAGCGCCATAAACATCAGCGTTACTACTGGCGCTATCGGCCAGAACGGAACCGGAAAGCGGATATTCTCACGCTCCTGCACTGACAAACTGCGGCGCATGGCAAAATGAGAGAGCAAGATCATCAGCCAGACCCAAATCGTTGCAAAAGCTGCCAGCGACGCGATCAGCACAAATACGCGTTCCGGGATCAAATAATTAAGCACCACGGCCCCCAGCAGCGCCACCGCCATAACGATCACTGTCATCCACGGCACACCATTACTGGCGATGCGTAAAAAGCTTTTTGGCGCCATGCCTTCATTTGCCATGCCGTACATCATGCG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72892-73957 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028271.1 Mixta intestinalis strain SRCM103226 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72892 29 100.0 32 ............................. CCGTCGCGTAGATATCCATCCTGACCGCGTTT 72953 29 100.0 32 ............................. TTTCGACAGGTAATTTTAACGGGGTTGTGTAT 73014 29 100.0 32 ............................. CGAACGGGCGTTTATTACAACGCTGACAGGCG 73075 29 100.0 32 ............................. GCCGACGCAACGTATGATATTCAGCCACCAGC 73136 29 100.0 32 ............................. GGTGCGATTGAAATGGGATGGTACGAAAAGCC 73197 29 100.0 32 ............................. AACAAACTCTTTACCGGCCATCCGGCAGGCTT 73258 29 96.6 32 ............................A TTAGCCGGTCCGGTGTTCCCCAGATAGTTAAC 73319 29 96.6 32 ............................A AAAATTTCAGGCTCGGAATGTGGCTATAAATT 73380 29 100.0 32 ............................. AGGAAGACGATTCCGACATTATTTATGCGGGT 73441 29 100.0 32 ............................. GGCATAACCTGCATTAACCCGCGAGCGCCCAC 73502 29 100.0 32 ............................. ACCGTGAACGTCACAATAACCGTTACAGAAAA 73563 29 100.0 33 ............................. TACGGGTCATGCGCTGGGCCGCCGCTATTCCAC 73625 29 100.0 32 ............................. GTCTCCGCTCCAGCGCCAGGTAGCCTTTTCAA 73686 29 96.6 32 ............T................ AAATAGACTTCAATAATCTCGCCTCTCTGTAC 73747 29 93.1 32 ............TT............... CACGGTGATGAGCGGTAGTAATTCACGTCCTG 73808 29 93.1 32 .......T....T................ CGTCAATGGTTATTAATCTGTTTTCAAAATCG 73869 29 96.6 32 ............T................ GATGGGGAGGGCATAAACGATCTGAAAGAATT 73930 28 79.3 0 ...........TT.........-..G.TA | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAGGCGTAATGGCAAGAATGCGATCGTTGCGCAGAATAAGGTCATGGTTTTCCAGCATGCCATAAGGTTCGGGACGAGTAGGATCGAGTGTTGCCAGTCTGACGTTGCGCCAGATAACGTCGGTGGATAGCAGTTGCACGGTGATATCTTCCGGTTGTCATGTGTTGTATATACATTTATTTGCAAACAAGCATCGCCTGTCAATAAAACCCTACGATGATGTTATGTCTTTGTGATAGATGACACTGCCTAGTATTAACGGACAAGTGTTTTGCATAAAAAAGCAGCGCATTAATGTGGGCTGCATCAAAAAGATAAAGCGATTTTTTTCATAACATCATGGGGTTAAGCGAGTGTAGTCTGGTGGAAGTTAGAAAAACACTTGTCTTAATTTTAAAGCTTTTATATTTCAGTTAGTTAAAGCTCTTTAAAAATTGAAAAAAATTGGTGGAATTTTCGGTGCTATTTTTTATCTTATAAATCATTTATATAGTTTTAGA # Right flank : ATTCAAACTATAAACTCTTTTTTCTACCTGTCAGACCAAAGCGCCTGCTGTAATAAGGTGCTTCTCCCTCTGGAGATACCAATACAACCTGGGCGGCTGGGCGATGCTGTTTTTTACGAAACCGCTCAAGAAGATCTTCGTCAGGTAATGAAAAACTAGCATGAAGTTTCTTCCATAAGGAAAGTCGTATGGATAAGCGGCTTTTTTCCCATGAGTATTCGCTTTCTTCAACAAGGGGATGCAATACATTCTCCTCATCTATCCAGGCCAGATAAATATCCACGCTTTCTTCACCGAGACGGGTAGTAAAATCGCGATCCCTGTCCCATAAAAAATCACTGGATTTTATGTCATAGCCCTTATCACGTAGTAATAAGTTTTGCGCAGCGACCGAACGCTTGCTCAGAATTTCGCCAAAATTCAAATCAGCAAGCGTTTGCAGTTCAGCAGGAGCGGTAATTTTTTGCCCATAAACCCCATCCACTAAAGCGCGCGCATTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3858911-3860037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028271.1 Mixta intestinalis strain SRCM103226 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3858911 29 100.0 32 ............................. GATAATCAAATTGTTTTTAGCGCTCTGGAGCC 3858972 29 100.0 32 ............................. CACTGGCTGTTTTCCCGTGGAACGCCATCGGG 3859033 29 100.0 32 ............................. AATGCGATCGTCTGCTGTGGAATCGGGTGAGT 3859094 29 100.0 32 ............................. AATGCGATCGTCTGCTGTGGAATCGGGTGAGT 3859155 29 100.0 32 ............................. TGGGGTAACCAGCAGGACCTGGACTGTGCCCG 3859216 29 100.0 32 ............................. GTTCTGGATAGCCTGGACGTGATTGTGAGCAT 3859277 29 100.0 32 ............................. AGGGCACTGTTAACACCTGACGTGGCACCAAA 3859338 29 100.0 32 ............................. CCAATTACGTTGGGAAAAGGGGGACTCTGCGC 3859399 29 96.6 32 ......T...................... ACAAAATTGTGGAACCACCAGTAGAGCCACTG 3859460 29 100.0 32 ............................. GGTAATTTTTCATTATATATCTCCTGAGCATT 3859521 29 100.0 32 ............................. GCTCTCAGGCGCCCTTTCGCTGTTTCTGTGGA 3859582 29 100.0 32 ............................. GAAAACGGTAATAACAGTAATGTTTTTCCATA 3859643 29 100.0 32 ............................. ATATTAGTGAGGACGCTGCGCAATCTGAGGGC 3859704 29 96.6 32 ..........T.................. TGTCGATAGGTGTGTACAGCGCGGCACGTGAG 3859765 29 96.6 32 ............C................ GCCGTTATCGCCTGCTCGGCACCGTAGGCGAG 3859826 29 96.6 32 ............C................ GTCGCGTCGAATTTGTCCTCTAACATGCCCTC 3859887 29 96.6 32 ............C................ CTCTCAGTCGGCTCAACCGGCACCAGTTTCCA 3859948 29 100.0 32 ............................. AAACCCCTACTATTTTTTCGCTCGTTCAGGAA 3860009 29 93.1 0 ............C....A........... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ATTTGTGAGGGAGCGTGGAGCGAGAGATCGGCGGTTGCAAGGCCGATGGTATGTCCCATTTTTCCAGCCAGCTGCTGCGCGACGCGATTGGGGACGTAATTCAGCGCTGCCATCGCCGCTTCTACTTTTAACCGGGTTTTTTCTGCAACGTTGTCAGCCTGATTAATAACGCGTGATACGGTCTGGTAAGAGACGCCAGCATGCTGTGCCACGTCATAGAGGGTTATCGACTTCGTTTTCATCCCGGCTTCCTTATGGTTGCGTGTAGGGCTGCGCTATTGAGGTGGCGAAATAGTATGTCGGAGAGCAGATAAAGTAAAAAAGGGATAGTTGAGAGGGATGAAAATAGACATAGGTCAGTTGGTAGAACGGTAAGATTTATCGGCTGGTTTAAAAAAGTATTTTTATTTCAACCAGATAAATAAATGAAAAAATGGGAAATAAGCGGTAGATTTATTCTCTGTTGATTTTTTCTTTAGAATCAAGGATATAATTTTAGA # Right flank : GTTTCAAATATGGGCGGCTTTTTGAGTTGTGATAAGGCTGAGCTGTTAGGTTTGTACAATAGCTTGCCGGGAAGCCAACAAGCCGAACTAATAACCTGGTTAAAAAATGCTTGATCGTACACTCGCTACACGAGGCATCCCAGGATTTGGCAATGTTGCTAATATCGTATTAATAACGGGCTGGTTGATACTGTGTATGATAAGAATCCATCGAGACCACGTTATCGCGTTTCAGTATCCGGACACCGATTCCTGGAGCAGTATAATAAGGCTGAAGGGTACTGTATAATTACAAAAAGCGGGTTAGTAAGCCAAATTGTACTGTAAAGTTCCCGATTATTCGGGGGTTTATATAATGGTTTCTCCTTTCACACGAAGGTAAACCAGTTATAGTCAGATGGATGTGTACTCCCCCGCGCCAGTGGTGGTAATGGCGGCGATAATAACAGGATGTTCAGTGCTCATGGTAAATAAAAAACGATTGCGTGAAATTATATTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //