Array 1 150355-149187 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJLR01000025.1 Dickeya undicola strain FVG1-MFV-O17 Dickeya_sp._FVG1-MFV-O17_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 150354 28 100.0 32 ............................ CTCAACCAGTGGCAAGAGCAACGCCGCAAAAA 150294 28 100.0 32 ............................ CGCTGAGAGGTGGCTTAATCATATGATTTTAA 150234 28 100.0 32 ............................ GCTGATGTGGACAAGCTGAAACGCTCACTGAA 150174 28 100.0 32 ............................ AGTTCTGATACAGCCGCAGTTAGCACAGCTGA 150114 28 100.0 32 ............................ TTGATGACTTCATCTTCATTTAGGATATCAGA 150054 28 100.0 32 ............................ ATTAAACTCTACTGCGTACGGCACCACTTTTT 149994 28 100.0 32 ............................ GCTATCCCCATAACGGCCAAGCAGATGATGGC 149934 28 100.0 32 ............................ TACAGCAACATCCCGGTGAGCACAGGGCCTAC 149874 28 100.0 32 ............................ CGGAAAAGTGCTTACTCCGCGTCGGTTCACGT 149814 28 100.0 32 ............................ ATCACGGCGTCAGCGTCGGCGAATCAACAGAC 149754 28 100.0 32 ............................ ATGCGGATCAGACAAACGAATCGGACATCTCG 149694 28 100.0 32 ............................ GGGATCGGCTGGCTGCTGGAAAAGCTCGGCGT 149634 28 100.0 32 ............................ GCATGGAGCAGCATCGCGCCAATATGGGGCTG 149574 28 100.0 32 ............................ ACCCTGGAGGGGCGTCACGGGGCGGGTCGTTG 149514 28 100.0 32 ............................ TTTGTACGTGTTCGGCGTGTTATCCGGGAAGC 149454 28 100.0 32 ............................ ATATAGACATCGTCATCGATATAGAGATCCCT 149394 28 100.0 32 ............................ GGGCGGAAGCATTTGATACAACGAATGTATAT 149334 28 100.0 32 ............................ ACCATTTCAGCCATTCGAGTCAGGAACGAGAT 149274 28 100.0 31 ............................ TTACGCGGAGAGCTGGTCGTAGCACCGCCGG 149215 27 78.6 0 ...........T.C......A..-..CG | GG [149192] ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGGCGGCGCTGGAGCAAACCGGATGGCTGAAAGGGCTGCGCGATTATACCGCCATCACCGAACCGCTACCGGTGCCCGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGTGCCGAACGGTTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTACCTGCCGCTGCGCAGTCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGACCAACCGGTCGCCGGAGTGTTCTCCAGCTACGGGTTAAGCGCCGCCACCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGTAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATAGCGTTTTTTCTTTAACAATCAGGTGATAAGCGATAATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGTGACACGGTTTATCCCGCACGAAACCACCCACCGCCCCCGCATACATTCGACAAACACATTCGCCAGCAGCACCCCGGCTGTGTGTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGGTGGTTCAGGCCCGCGATGCATACGCGGCCGCTGGCGATAAGGTAGACACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 159675-160842 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJLR01000025.1 Dickeya undicola strain FVG1-MFV-O17 Dickeya_sp._FVG1-MFV-O17_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 159675 28 100.0 32 ............................ CTAGACGCCGCTCCGTTCGGATATCGCCAGTT 159735 28 100.0 32 ............................ TGTGCGAATGCTAATAGGGATTGCTCATCCTC 159795 28 100.0 32 ............................ ACGATACAATAAAAAACCGCCCGAAGGCGGCT 159855 28 100.0 32 ............................ AATAAAGCATTGGTTGAACGATGCGCTGCGCT 159915 28 100.0 32 ............................ TTGCTTGATTGCCGCGATGAGTTCTAGTGAGA 159975 28 100.0 32 ............................ CTTAGCAAGTGATGGCTTTTCAGCAATAAATA 160035 28 100.0 32 ............................ TCACAATGACAGTCTTCAATCGGCTAAGCGCT 160095 28 100.0 32 ............................ AGTACCTTGAGTTTGCAGGTACAGGACGCATA 160155 28 100.0 32 ............................ ATTCTCAGCGTACCAACCTCACCACCCAGCCT 160215 28 100.0 32 ............................ TGATGCTACTGGGCGGCGTGTTGCGAGAAAAT 160275 28 100.0 32 ............................ TAAACTCTGAAACGTTTGCGGAGGGTTTCGGC 160335 28 100.0 32 ............................ GCAAAATCCGCCTGCCCCTGCCCTTTTTTATT 160395 28 100.0 32 ............................ GAACGGAGCGGCACTTAGGGGAAGTGAAATTC 160455 28 100.0 32 ............................ ATTTAACAGTGGCTATTGCTGTGAACAGCAAC 160515 28 100.0 32 ............................ ATTCATGACGCGCTGTCTCAGGGGTTCGACAA 160575 28 100.0 32 ............................ AGTACGTCTATCTGACGTCGATCGCTGTTTCC 160635 28 100.0 32 ............................ TTGAGCAACTTGTCGTACAGTTCGATGCGGGT 160695 28 100.0 32 ............................ GGCGAACGGGAGCGACAAGCAGCGGCCACGCT 160755 28 100.0 32 ............................ AGTAAACAGCCTGCGCATAAGTCAGTCTGCAA 160815 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGATGTGCCGGTGCCAAGCATCATCACACTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCCTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGCTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAATTAAAGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTTCAGCCACCTTTTTCAGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGCAGGCTGAAATACAACGGGTTAGAGTCAATAAGTTACG # Right flank : AACAACGATTGCAGCCGCTGTAAACGCAAATCCGTTCACTGCGAGTAGGCAGAGGTTGACGGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCGCGGCAGGGAAGCCGCGCAAGCCTGTGCCGTGTTGGGAACACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCCAAGAAGCGACGCGGTTTATCCCGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAATCACTATTGCTACCCGCCGCCGTGGCCCGCTTTTCCGGCAGCGCGTGAGATAGCACCGCCGACCGGCGGACCGGTGACGGCGCGCCGCTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //