Array 1 10895-11404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQC010000003.1 Nocardia farcinica strain BJ06-0131 NODE_3_length_555888_cov_28.290195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10895 28 100.0 33 ............................ CTCATCCACCACCATCAGCGACGTGCGGCCGTG 10956 28 100.0 33 ............................ CGACGCGATGGCCCTTCTCGAGCAGGAAGGGTT 11017 28 100.0 33 ............................ CCAGCCGCAGACGACGACCGCCGAGCAGGTCCG 11078 28 100.0 33 ............................ CCGCCTGAAACCATCGCAGAGAGGATCGAGCGC 11139 28 100.0 32 ............................ CTAGGCCACCTTGCGGACCCATCCAACCAACA 11199 28 96.4 33 ........G................... CGGCGGACCAGCGAGCCCACCGAACTCCCTTGG 11260 28 100.0 33 ............................ GTAGACGCTGGCGACCGAGTGCCCGAATCCGGA 11321 28 96.4 26 .............A.............. CTGGGTGGCGACGATGACCTCGGTAC Deletion [11375] 11375 28 100.0 0 ............................ | GA [11398] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCACGTGCCCGGCCCGACCGAGTCATACCTTCCGTGCTCCCGCCCGTGTGCGGGGGGGGGGGGGGGGGTGAGCCCCGAAGCTAGTTGCCCGTGAGTGGGACCGACGCCTGAAACGAGCACTCGGTCGAAGACTGTCGCGACCCGAACCAATACGTTGTCGTCCACAACCGGCGGCGGCGAGACGCGAAAGGTCTTCGTTCATGCGGACTGCTGACTGGGCCGTGGGTCACCGCGATCGGGGATTCTCTGCGATGGGTCCGGTCGCAGCTCCGCGCGCAAAGGCCGGCGTGAGGGTTGCGCGCCGACCCACACCGGCTTGCGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121330-122272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQC010000003.1 Nocardia farcinica strain BJ06-0131 NODE_3_length_555888_cov_28.290195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121330 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 121391 29 100.0 32 ............................. TCGACGTAGATCCGCGCATCCCCGGCGGCGAT 121452 29 100.0 32 ............................. AGGTGATCGGCCTCGGCGTGCAATCCTCAGTC 121513 29 100.0 32 ............................. ATTCCGGAGAGGGTGTCGGGCAGGTCGTAGAG 121574 29 100.0 32 ............................. ACGCAGAACAGTTGACGGCAGCGGCGGCATCG 121635 29 100.0 32 ............................. GAGACCACCGACCACAACACCACCGACAGCAA 121696 29 100.0 30 ............................. TTCACGCACGGCTGCCTGTACGCGGACTGG 121755 29 100.0 32 ............................. GAGGCGCTGTCCGCGCGACGAGAGCTGGCGCG 121816 29 100.0 32 ............................. GGGGTGGCGCCGATCTGCCCGCGCAGGAACGC 121877 29 100.0 32 ............................. GTCGCCGCTGGACTTCCGCCCGACACCGGCCG 121938 29 100.0 32 ............................. AACGGCACCGAGGGCTGGTCCCCGCGCCAGTA 121999 29 100.0 32 ............................. CGCGGCGACGTCCCGGTGTGGTGGTACGGGTT 122060 29 100.0 32 ............................. TTGGCGGACGACGGCCGTGCTGGTGCGGTTCT 122121 29 100.0 32 ............................. CGCCCCTGAATCCCGATTGGCCGCCACTGTGG 122182 29 100.0 32 ............................. CCGATCCGGGAGGTGACCCGGAAGGCAGGCAA G [122190] 122244 29 93.1 0 .........C................T.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGACGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGTTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAATCCCGCGACCTGGTCGCGTTCGGGCTGGGCAAGGTCGTACCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATGCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 115184-114709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQC010000014.1 Nocardia farcinica strain BJ06-0131 NODE_14_length_129385_cov_27.062518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 115183 37 100.0 38 ..................................... GAGGCGTCCCGAACGGGCCCGCTCGTGATGAGCAGGTC 115108 37 97.3 39 ...............................T..... TCCAGGATGAACGCCGCGGTGCGATGACGGTCCGGATCG 115032 37 100.0 37 ..................................... TTCAACTCCTGCTCGTTATCCGGGTGGACGAGGTTCA 114958 37 100.0 32 ..................................... GATTTGTCGGCGGTCCGGAGAGTTTCCGGCGT 114889 37 100.0 35 ..................................... GCCAGCACGGCCGAAGCAGTCATCCGTACGCTATG 114817 37 100.0 34 ..................................... GGGCTTGTTCGTCCGTCTGGATCTCGTTACTGAG 114746 37 94.6 0 ...............................T.G... | G [114712] ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 98.8 36 CTCGCTACGCACAGCCCGACCGACAGGGCATAGAAAC # Left flank : GAAGACCGCCGCATCGCCCACTTCCCCTCGACAACGCAGCCGGCCCGCGTCCGTGAACACCACACCCCCGCCCCGCCGTTGACCCACCACGGCATCACCATCCCCCTCGCCCGCGTCACCTACCGCGACACCGCCGAAAACCTCCCCGACCCAACCCCCGACACCCATCTCAACGTCTCCCGCATCATCGCCTTCGCCCACCCCCAACGCACCGACCTCGTCTTCCCACTCGACGAAGTCACAGACACCCGAGGCCAGATCATCGGATGCCGAGGATTCGGCACCGCGAACACCGACACTGAACCCCCATGACCCCCACCTGTACAGCGCTCGCACGAAACCTTGAAAAACGCCTCGGTGCTCGCAACCACATCACCGCAGCTCACAGCCGCTGCAGACCCCGTATCCGGCACGATCAAGATCGAACCAACGCCCGCCGTGACGAGGTGCTCGCAAAGTGGTACATTCACGCAGGTCACAGCCACCGAAAATTGGTAGCC # Right flank : GCCATGACGCCCTGTACCGCGGGCGGTCCCGGCGGTGTGCGATCTCGGCCCCGGATGCCGGAATAGCGGTGTGCTGGCAGAATGACGCGGAGTGGTTGCCGGGGCGGTCATCGGATTCCGTGATCCCGATCGTCGCGGTGAACTCCTGGATGGGGCGAATCATGGGCATTCTCTACGCGAGGGCATTCACCCAGCAAGCGTTGCTGGACGCTTGGGAGATCGTGCGGGACAACGCGTTGGCGGATGGGCGTTTCGATCCGGCGGTGGAGCGTTTCGAGGCGGACGCTGCTCGGCGGATCGCCGATATCGCTGCTGAATTGGCGGCGGGGGAGTGGAATCCGGGTGCGTTGTTCCGGGTCGAGATCCCGAAAACCTCTGGTGGAGTGCGCAGGTTGAGTGTGCCGCGTCTCGAGGATCGTGTGGTCGAGCGGGCGTTGCTGGCGGTGTTGGATCCGGTGATCGATCCGCGCCTGTTGCCGTGGAGTTTCGCGTATCGGAAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCTACGCACAGCCCGACCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 9813-9963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQC010000016.1 Nocardia farcinica strain BJ06-0131 NODE_16_length_122441_cov_28.431504, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9813 29 100.0 32 ............................. GCCTGCGCGTTCGGTGACAGGTCGGCCAGCGC 9874 29 100.0 32 ............................. CCTCCCGGAAGCGCGTGCACGCCGCCGCCGCT 9935 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 37 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGGATCACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGCTGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCGTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGACGGCGGCCTGTCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCTATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCTTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCGCGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 103521-102454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQC010000017.1 Nocardia farcinica strain BJ06-0131 NODE_17_length_107437_cov_27.434172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103520 29 100.0 32 ............................. TCGCGCAAGAACGGCTCCGAGGCCCGGCGCAA 103459 29 100.0 32 ............................. ACGACTCTCGGCCGCACCACGGCGACGATCCG 103398 29 100.0 32 ............................. CGCGACTTCCTGTGCGTGCGGGCAGACCATAA 103337 29 100.0 32 ............................. TCCTGGGCCATCCCACGCAGCTGCGCGGCCGC 103276 29 100.0 32 ............................. CGCGGGGCTGCTCGTCGCCCTCGGCCGATCGG 103215 29 100.0 32 ............................. GCGGAGTCGATGTACCGCCACGGCATACCCTT 103154 29 100.0 33 ............................. GGGCCCCACCTCTCGCCGAGGTGGGGCCGTTTC 103092 29 100.0 32 ............................. TGGTCGGACTGGAACTGCGACTGCAGCGTTCA 103031 29 100.0 32 ............................. ACCGGGTTCGGCGCCCCGGAGTCCGCCAACGC 102970 29 100.0 32 ............................. CCGCCACCCTCACCCGCGGCGGCGCGACCCTC 102909 29 100.0 32 ............................. ATCAGCGTGCCGGTGCCGGATGTGCCGGATGT 102848 29 100.0 32 ............................. ATCAGCGTGCCGGTGCCGGATGTGCCGGATGT 102787 29 100.0 32 ............................. CCACCGCCACCCCCAGGCAGATCTACTACATC 102726 29 100.0 32 ............................. TCCTTGAGCGCGTCACCCGCCTTGTCCAGGGC 102665 29 96.6 32 ............................G ACCTGAAAGCGGTGCTGTCCGACGACGACGTG 102604 29 100.0 32 ............................. GGGCAAGAACATCCGTACTCGACGCGGAGTGT 102543 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 102482 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : AATCCCCCACACCGCTGAACCAGAAACCACCACCGCTCACGACATACGCATCATCGCCCGCAACCGAGTCGCCTTCGGCAAGAAGAAGCACAACCGACAGGCCGGGACCGTCACCCTCCACACAGCTACCTATGAAGGCAGACTCGAAGTAACCGACCCCGAACGCCTCACCACAGCCCTGCTCAACGGAATCGGACCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGACGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCCACCCGCAGAGCAAAGTGAATGAAAAACGCGCCCCTCGCGAATATAACCGCAGGTCAGGAAGT # Right flank : TGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTCAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCGCCAACGAGGCATTGAGCCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATAGCCGCATACGTTTCAGCCCCAACGCGGAGCGGATATGGTGCGTCGCGGCTGCACTCGAGGCCGGCATGGTCGGCATCAACTCAGGCCTGATCCCCAACGAGACAGCGCCGTTCGGCGGCATCAAGCAATCCGGCCTCGGCCGGGGGGTCGATCAATGGACCATTCGCAGCACGACGGCAGGACCGACGTCCCGTCTCTCCAGCTGAGTTTGTGCTGCACCGATGTATACTCCGAGTGTCTCGAGTGAGGTTGTGCCGAGGCGGGATGAGCAAGGGGGGAGTGAACGTGCCAGATCCGTCGACTTCGCTGACAGTGACCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //