Array 1 3401-3699 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIAC01000087.1 Paracoccus sp. SMMA_5_50 NODE_87_length_10637_cov_109.038731, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3401 36 100.0 30 .................................... CAAAGTCCTGCGCACCGTGCTGTGTGACTA 3467 36 100.0 29 .................................... CTGCTCATAGCGACGCTTGGCCTCGGCAC 3532 36 100.0 30 .................................... TGGTCGAAGTCAGCGGTCGGCACAGTTTCG 3598 36 100.0 30 .................................... TGCCTCGCTCAATGAGACTCAGCATGCCCC 3664 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTCCGGGCTTGGCTACGTCGCTTCTTTTGCTAGGAT # Left flank : TTGCACGTGCAGATTGCCGACGACGGTCCGGGCCTCGCGCCCGAAAAGGCGGCACAAGCCCTGACGCGGGGCGCACGCCTGGACGAGACCGGCCCCCCCGGCGCCGGCCTGGGGTTGGCGATCGTCGCGGACCTGGTCGCCCTGCATGGCGGCAGGATATCGCTTGATCGGGCGCGGCTTGGGGGCCTGTCGGTGCGCGTAGAGCTTCCCGCCCCGGCGCTTGTCCAGTCCCGCGCATGACCTTTCGCAAGCCAGCAGGCCGCAACCCCTTCAAGGTCGTCGATTTTCCCTTGCCCCACCCCTCACGACCACTTATCTGACCCCATTACCGTCCCGCGCGGCAAGCAGACGGAAGCGTGGCCGAGTGGTTTAAGGCTCTGGTCTTGAAAACCAGCGTGGGGGAAACTCCACCGTGGGTTCGAATCCCACCGCTTCCGCCACTTGCGCAAAACGCATTTCATTTCTTGCGTTAGGTGACGAGCGATTTCGCGGCAATCTTG # Right flank : TTGACCCCGCGCAACTTCTTGTTGCGCGGGGTTTTTTCGTGACTTGGCCCGAATAAATCTGGCCCCTGCACGCCTAGAACAGTGCGAGTTGAGCAGGTTTTTCCGCGGGAGTCTTGGAGCGTCGCTTGCCATGAAAGACCTGACTGAGCGCATATTGCTTGTCCGTAAAGAAAAGAACCTGGACGTGGCCAGCTTCGGGGACAAGCTCACCCACCTGTCGGGCATAACTTTCGGCCTTCTCCTTGCTCCATGCATGGCGAAGATAGACCGAAAACTGAACCATCTGGAAGCCAAGGTCCAACAGGTCGTTGCGGAACCGCGTGGCCCGCTTGCGTTCGGCGCTGGTCAGCACCGGCAGATCGAAAAGCACCCAGACCCACATGATCCTGTATCCTGAAAGCTGCCTGAAGCCATTGTCACTCATCCTCCTGCTCCTCGGTGGCGAGGGGGATCGGCCGGTCCGGAAAAACAAGGCGCAGTCTGCCCGTCTCGCAGGATCG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGGCTTGGCTACGTCGCTTCTTTTGCTAGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 12859-13255 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIAC01000038.1 Paracoccus sp. SMMA_5_50 NODE_38_length_24556_cov_121.453940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12859 29 100.0 32 ............................. GCATATAAGCAGCGCCTGCGCGATGAGGCGGA 12920 29 96.6 32 ..........................T.. GTCCGGCAGGCGTTCGAGGAATCCGACATATC 12981 29 89.7 32 ...........G.......A......G.. CGATCCTGAACTCGCGCATGTCGCGGCGCATC 13042 29 93.1 32 ...........G.......A......... ATGGTTAAATCCCTATGATCTTCTCGGCTATC 13103 29 93.1 32 ...........G..............A.. TGCGGCGGCCAGCGTCGGACAGGCGCGCGACT 13164 29 100.0 32 ............................. CTGTCGGCAGTCGGGCCGTCTGCTCTGGCTGT 13225 29 93.1 0 ..............T...........A.. | CC [13230] ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCGACCAAGCTGCATGTCTGGTGGAAGCTGACCGAGTCCGCGGAGGGGGCGGACCTCGCCCGGCTCTGCCAGCTTCGGGGCGAGATCGCGCTGAAGGTGGGTGGCGACACGCATTTCCGCTCGGCCCACCAGCCGATCCGCGTGCCTGGCACGGTCTATCACAAGGGCGGGCTCACCCGGCTCGTCCAGATCCGCGCGGCAGCCGATCTCGAGGTCGACCTCGCCAAGTTGGCCGAGCGCGTCGCCGACATGCCGCCGATGCCCGGCGTCGGCATGGCCACGGCCGAACCCCGTGAGAAACCCGCCATCGACGACGTGCTGGTGACGCCGGTGCATGAGGGCGGCGCGGACGAATGGTCCCGCTTCGAGGGGGCGTCGGCCGCCATCGGCTATTTCCTGCGGCTGGTCCACGAGGGCCGGATCTCGATGGACGAGGGCTGGACGGCGATCTGCGGCTACAACGCCGCGATGCTGCGCCCCGCCTGGCCGCTCGACCGGC # Right flank : GGTGGGGGTTATCGATAGTGTCCCACTGCCAAGCGGCAAGCACGCCCAGGCGGCTAGCACGCCCAGGCGGCTAGCGCTCCAGTTCCGAGCAACCTGGAGCCGGATCCAAGCCGACGTTTCACGCGCTTCCTTCAAGGAGAGCGTCGGGAAGTCACCCAAGGTGATCCACAAGCGGCGTTAGTCGCCCCGCTCACGCGGGACTTGAACCTGAAATCGCTTGGCGCCAGAAGGATACAGGCGGACATAAAGGCCGTTCCTATCGCTGAGGCGCTCCTTGTCGACGCCGAACCTAGCGGCCGCGAGTTTATTTACGGTGACGGGTATATGTTTTCCTTTTGGGTGTTACTCAGGTAGGAAAAGGGTATCGAACGGCATCGAGTTTGACTAAGCGCGCATGAGGGGATAAGAGGACTACTGAGGAATAAAATTATTCACAAACAATAACTTGCGATCATTTCGCGACGCCCCCTGAGGCATCGTGCATGGCTCGCTTGAACTTC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : CTGTTCCCCGCGCACGCGGAGATGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //