Array 1 9286-9783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUK010000023.1 Listeria booriae strain FSL L7-1063 NODE_23_length_24976_cov_31.968473, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9286 36 100.0 30 .................................... AAATTTTGATTATGAGGAGTGATGAAACCA 9352 36 100.0 30 .................................... ATTATTATGAAACTGTCACGGGTACTTCTT 9418 36 100.0 30 .................................... ACCCGCTTTATTGGTATGTCGTTTCGTCGT 9484 36 100.0 30 .................................... AGCAGTTGTTGTATTTGTCGCATTTTCCGC 9550 36 100.0 30 .................................... CTAATGAGTATGCAGATGAAAAAGACTTAG 9616 36 94.4 30 ..............T.G................... AAACGAAAAAGGCATACATTAGAAAGTCTG 9682 36 97.2 30 ................G................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 9748 36 86.1 0 ................G..........T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.2 30 GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : ATCAGAATACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCGTCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACAATTTGCTCCTCCTTTACGAAAAGGTGGCTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTGACTGCTTTCGAAACTAAAACAGGTTATATCACTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGATCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCACAGTAGAG # Right flank : CTTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTCAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 17116-15253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUK010000002.1 Listeria booriae strain FSL L7-1063 NODE_2_length_365205_cov_30.954999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================================== ================== 17115 36 100.0 30 .................................... CTTTTCCGAAGGCGTTCAGCTAGAAGCACA 17049 36 100.0 30 .................................... TTATCGCTCCAGGTCTCCATTTCGTCCTCA 16983 36 100.0 30 .................................... TTAGCAGTTCCACTTGCAACGCAGGCACAA 16917 36 100.0 30 .................................... TAAATTGTTCTCCTTTAAATGCCCCACCAG 16851 36 100.0 29 .................................... CGAACATGAAAAAGAAGTCATTATCGCAA 16786 36 100.0 30 .................................... CGGCGACACTTGCCGCCACAGTTGCGTATG 16720 36 100.0 30 .................................... ATTTGTTAGTTTATCAAAGTTTAGTTGAAG 16654 36 100.0 30 .................................... GAAATCAACGAGACTACATTTTATTCTTTC 16588 36 100.0 30 .................................... TTCCTGTATTCATCTACTCCGCCTCCTCAA 16522 36 100.0 30 .................................... TCGAGGATTCCTCTTCCGTCTTCGCTGAGG 16456 36 100.0 30 .................................... GACCGCTTAGGAAACGCATTTAATGCGTTT 16390 36 100.0 30 .................................... AAGTAAAAGGAAGGAGGTGCTGGCATGGGC 16324 36 100.0 30 .................................... TCTCTTTCGCATACTTCATTGACACGTCAT 16258 36 100.0 29 .................................... TGTAAGTAGTAGTAGACACTTTACCTGAT 16193 36 100.0 30 .................................... TAGGTAACGCGTTAGATACTTTCTGATTGG 16127 36 100.0 30 .................................... TAGCACAAACTGCTTGGAATGCAATTGTGG 16061 36 100.0 30 .................................... CCTTACCACTATTTTCAAGTAACGCCTCAC 15995 36 100.0 30 .................................... CTCAAATTCGTTTAGCCTACGATTTTGTTT 15929 36 100.0 30 .................................... TTTTTAGAATTTTACGGGATTGAGGGTGTA 15863 36 100.0 30 .................................... CAATCATTACCGTCATTGGCGGTATTATTA 15797 36 100.0 30 .................................... CTTCTTTGACTTTATCGATTACTTCGCCGG 15731 36 100.0 29 .................................... CCAGTAGGGGCGCCGTAATCCACACCTTT 15666 36 100.0 29 .................................... ACTCCAACAAGCTATTACAAGACTGCATG 15601 36 100.0 29 .................................... TCAAATTCGTTTAGCCTACGATTTTGTTT 15536 36 100.0 30 .................................... TCCTACGGTAAAGGTTGGCAGATGGTAACA 15470 36 100.0 30 .................................... ATGAAAATTAGTACACAAACAATTGACAGT 15404 36 100.0 79 .................................... CGGCGCAATAGCCGGGGGGCGCATTAGGCGGATTTGGGTATTAGGAAACATATATTACGTCATAGCGTATAATATGGTT 15289 36 75.0 0 ...................C...AAA.G.C...CCA | C [15257] ========== ====== ====== ====== ==================================== =============================================================================== ================== 28 36 99.1 32 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACCCTTGTGTTTGTGGAGGGGTTTAGGTCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACGGGAAATGGCTAGAAGAGGTATGCATGTTATTGTACTTGATGATAATCTAGTCGGTGCCTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAACTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAGCTCTGAAGACTTTCGACAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCTAAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTATTTTTACATTGGTCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : TTGGCTAAAGAACAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTAGACACGGTCATTTACATGCGGATTCGGGATTTAGCCGATGCCACCCATGTTAGCACAACGACAATTTTACGGTTTTGCCGGAAGTTTGGATGTAACGGTTTTTCTGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACGAAAATAAGTGTGGACATGTCGGATGAGACAACGTATATTGATTTTCTAAAACGCACGGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATTGCTGAATATGG # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 64964-65714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUK010000011.1 Listeria booriae strain FSL L7-1063 NODE_11_length_121492_cov_22.760013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 64964 30 100.0 36 .............................. TCAAAAACCGAGCGCAGGCGGTAGCATTGTCGATTA 65030 30 100.0 36 .............................. TCTTAATCAGTCAAGGGCAATTGAGTGGTGCTTTGA 65096 30 100.0 36 .............................. GTAAGAAACTGGCTATACAAAAAAGTAGGGTGTACA 65162 30 100.0 35 .............................. TTGTGTAATGCTCGTTGTTCATCCCATCGCTCTTG 65227 30 100.0 36 .............................. AACCTCATCTTTAAATTTTGTTTCTGATTTATTGGC 65293 30 100.0 35 .............................. GCTTTTAACGTAAGCGGTATCCATCCGGTATCTGC 65358 30 100.0 35 .............................. TGTAAATCATCATTTGATAGTTTAATGTTAGAAAC 65423 30 100.0 34 .............................. CTTTATCTGTTCCCGTGTTCAATAGCGTTACTAA 65487 30 100.0 36 .............................. TGAACTTTAGGAGAAACGTACTTAAAAGGTTTCATC 65553 30 93.3 36 ............GT................ CGGGCATACTTAGCCAAGAAAACTGAAAAGTATATG 65619 30 90.0 36 ............G...C...A......... TGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTA 65685 30 70.0 0 ........A......A.TC.A...C..GTA | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 96.1 36 GTTTTTATCTAAACATTGTGTAATGTAAAT # Left flank : CGGCGATGACCCACGTCAATACCTAGTCAGCACAACCGAATTCATCAAAAATGACCACGGCGAACTAACTGGTCTGCGCACGATTGATGTAGATGACATCGATGCTGAGCGCAATATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACGACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGTGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : AGCGTATCGGCAATTTCACACAACCCATCTACAAAAATAAAAAAATCTGTCATCCTATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGTATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAAAAGTGGATTCAGCACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACCAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTACTATGAGAAGAGATAAGAGAAACCAAGGCTCGAATTATAAAAACGCCTTTATCGTAACTTGTAGCTTCTTTATTATCATTCAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAACATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 69760-69267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUK010000011.1 Listeria booriae strain FSL L7-1063 NODE_11_length_121492_cov_22.760013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 69759 30 100.0 35 .............................. CTCTTGGCAATCGCTATTTAGTTTGGCTAAAAGGC 69694 30 100.0 36 .............................. GATGCGTTCAGCGTTTAGGCTGCCGCCGCTTTACAC 69628 30 100.0 36 .............................. ACCTACAGCTCCGACGAGCGCAACTAAAACAGAGAC 69562 30 100.0 38 .............................. AAAAAGGACTTTGAGCAGAAACTAAGCAAGTTGGAAGT 69494 30 100.0 36 .............................. GGCGAGTTCGCCAATTTGATTGGTCTTTCGAGTCAT 69428 30 100.0 37 .............................. GCTGGCGTGGATGGAGGCGCGGCATATGCGAAAGCGT 69361 30 100.0 35 .............................. GAAGTTTGAGGAGGAACAAGCATGACGGTAAATTT 69296 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : AAAATAGCTCAACTCCCCTATTATTAAAAGCAAGTTCAAATAGCACAATGAAACTAGTAACAAGCAGAAATGTTACAGCTACGATGACAAAAGTTAGTAAGGCAAGTGCAGCACTCGTGTTAATCGGACTAGGTTTGGTTCCAGGTCTTGGTTTGACAGCCGCAGCATTTTCCGTGTATGGTGTTATAAGCGAGTTTAAAAATATATCACAATTAAACAATACGCCAATAATTACCAGTATAGGAATGATTTGTATGTTTACAAAGATAGCAAACGAACAAAATTATTAAATAAACAAACTGGAATTCCACAAAGACATTTTTCTTAAATGAATAAATTAAATTTATGAGGCTGATACTTTAAGTATCGGCTTTTATTTTTAATACTTAAGCTAGCCTCATATATTCAGGAAATGTGCAGATAATCGCCTATGGGCTATGTTCGCATATTTCTTAGGTAAAAACGATTAGGCGTCTACATCATGATTATTAATTGACTTA # Right flank : TGGTACCCCATCAACGCTTACTCCCATCATACCTCAAACACCCGAATCTGTCGACAGGCAGCCAAATCCTAAATTTCCACTCTCAAACCTTACAATCTGAACTTCGAAAATAGGCTTAAACTCTTTAGTCCCAATACATAACAAAAATCTGTCGATGCCCCCATCATTTTGCACTACTGGAGGTCGACAGATTTTTTTCCGCGTTATTATGAATCAAGGTTTTCTGTAGAAATTATCTTGTTCTTCCAATCTTGCACACTCATCGCGCTATTCGCAGGGATTATTTTCTTTTCGTATTCAAAATTCTTGTTCGAGAAATTCGCTATGACTTGTAGATTTGCGCCGAATGTTGTTTTCTGAATGAGGCGTTCTTTATCTAGCACTTCAAATCAGGCTTCCCATGCTAAAATGCTTCCTATTTTTAATATTATTGGATGCATTTTGGAATAGTCGTCATGGATTTAGTTTACGATTTAATCTTAAGAAACTGATCATTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 73584-74402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUK010000011.1 Listeria booriae strain FSL L7-1063 NODE_11_length_121492_cov_22.760013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 73584 30 100.0 35 .............................. TTTTTCTTAACGCGTGGGTCCTCTACGATGTTTTC 73649 30 100.0 35 .............................. GCGGTAGTTGTAACAAGTAGCAATGGTTCATCTTG 73714 30 100.0 36 .............................. TAATGAGGTTCAATACAACAGCAACCAACAAAATAA 73780 30 100.0 37 .............................. TCATGTGGAACTCGTAGAATAATTTCCAACGTAGTTT 73847 30 100.0 36 .............................. TAACCCTTGTGTAATAGGTGTGCCTGTGAGCTCATT 73913 30 100.0 36 .............................. ATCTCCACGCCTTGATTTGTAATCTCGTAGCTTGAA 73979 30 100.0 36 .............................. AAAGCGATATATTGATGAAGCAAACCTTGAACTTCA 74045 30 100.0 38 .............................. TGCAGACAAGACTGTCGGCTTCGAGACCGAAGCGCCGA 74113 30 100.0 36 .............................. TTGTTTGCTACTAATTCGTAAATGTCGCGTGGGTCT 74179 30 100.0 34 .............................. TTAATTTTAACAATATTACTATCCATTTTATTTT 74243 30 100.0 35 .............................. CTTATTACTTTTCCGTCTTCTATCGTGTAAGGTAT 74308 30 100.0 35 .............................. CAAGTTAAAAAATTCAGTTATACCGTGGTCGATGA 74373 30 90.0 0 TG.....................A...... | Deletion [74424] ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAATTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGCTGAGAGGGTACCT # Right flank : TAAGAACGACAACAATGACAATGTTTTTATCCAATCCCAATGTAAATATGAAACTCCCCCATAAACATAACATCCCCCAACCCAATAAACTATAAGCAACCACTAAACTACCCAAAGTCTATAAGTGTTTTTTGTCATGCTCAAAAAACCCATAGACTTGCTTACTGTAAATGAAACAAATAGGAAGTATAGAATATATTTCATACATTTAAAAAATATATTGGTGAAAAACATTTACAAAAATAAAATAATAGTGTAAAATTCTTTCTGAAAGGAGCGTTATGATGAATATAAATACACTAAAAGGACAATTGATAGTATCTTGCCAAGCTTTAGAAGGTGAACCTTTGCACAGTTCCATGATTATGGCGCGAATGGCGCTTGCTGCTAAAGAAGGTGGTGCTAAAGGAATTCGAGCAAATTCTCCGGAAGACATTCAAGCAATCAAAGGACTAGTGGATTTACCTATCATTGGCATTTGGAAACGCGATTATGAAGGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 275212-273870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUK010000003.1 Listeria booriae strain FSL L7-1063 NODE_3_length_293501_cov_26.161977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 275211 30 100.0 35 .............................. CAATTTTTAACGACTTCCTCCATTTTTGCCTCGAT 275146 30 100.0 37 .............................. CCATTTCCAAGTTCCATCGGCCTGTAGTTGTTTCATC 275079 30 100.0 36 .............................. ATTGTATGCCCTTGTCCTGTACGGTCATTTAAAAAA 275013 30 100.0 35 .............................. ACAACATTTAACTTATATTTTGTCATTATATTTCC 274948 30 100.0 37 .............................. TTAAGAGTAACTGGTTATGCGTCTGTTTTTAATTCTC 274881 30 100.0 37 .............................. AGGTTTCTTCTTTATTTTTAAAGGGTCTGCGGTGTTA 274814 30 100.0 36 .............................. CCGCACTACAGGACTATATTGAAAAATTTTAATATC 274748 30 100.0 35 .............................. TGAGTAAGCCCCTGTCTCTACGTCAGACCACACAA 274683 30 100.0 34 .............................. ACATGTTGTGATGAACGATGGAACTGTTTACGAA 274619 30 100.0 37 .............................. AACAGGTGGTAATGTTACTAAATTTACTTCTAACTTT 274552 30 100.0 36 .............................. CTGAATATGGGTACCTTTTCAACAAGGGTTATCTGG 274486 30 100.0 36 .............................. ATGAAAGCGCTCGTTCAATTATTTTTTTATAGCCCG 274420 30 100.0 36 .............................. TCTTCCATGAACAATAGATTGTTAAGACCTACCGCA 274354 30 100.0 35 .............................. AACTGAGAGAAGGCAGCTATCACTAACCGAATCAC 274289 30 100.0 36 .............................. ATGTTTTATAGTCTCAAATAACCGTGTTGATATTGA 274223 30 100.0 36 .............................. AGGGGTAATGTGAAGTACACAATTTTGTTCGCCTTC 274157 30 100.0 36 .............................. ACACACGCAAGAACCAAAGTCGATTAATACCATATT 274091 30 100.0 36 .............................. GATGGACGAATGACGAGTTCCACATATAAGGGAATA 274025 30 93.3 35 .................A....G....... CCAATCCACCAATTTTCAGTTTTACGGTGTTGCTC TAAA [274005] 273956 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [273900] 273899 30 70.0 0 ......CC.G.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 97.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGATTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 86811-87952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUK010000006.1 Listeria booriae strain FSL L7-1063 NODE_6_length_225949_cov_25.241681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 86811 30 100.0 34 .............................. AGACCTTAAAAAGAGAGGATGTATTCACTATGAA 86875 30 100.0 36 .............................. TGTGTTAACGTTTAAGTATATTGCCCAAAATAGCAC 86941 30 100.0 36 .............................. TCACACAAGAAGAATTTGATTTAAAAAAAGCTGAAC 87007 30 100.0 35 .............................. GAAAATCCGATGATTGTTGATGATCTTTGGAATGA 87072 30 100.0 34 .............................. TTCGTTTATACGCTCGCAAAAAGGAAATGCTTTA 87136 30 100.0 35 .............................. CTGTTTAAATCGTAGTAGCCATCAAATTTAGCAAA 87201 30 100.0 35 .............................. TTGCCCGTCAAAATGAAGGCCTTTCCGAACTCATT 87266 30 100.0 36 .............................. ACTAAATCGCAAAACATAGATTTCATGGCTGTTTTA 87332 30 100.0 35 .............................. ACTAGTAAACGCTTGTTGTATACTTCGGATTCTTG 87397 30 100.0 36 .............................. CTCGCTGTCTTTTGGGCTAGAGTTGGTAACCACCAC 87463 30 100.0 36 .............................. TTTCAATCTCTCCTTTTTCATTTTGAATTGTTTCTA 87529 30 100.0 36 .............................. TCGTTTTCTGTAATTGCAAAGCCTTCTTCAATCAAA 87595 30 100.0 36 .............................. ATTGAATTGGCAAAGCGACGTTTGAAAAAGATAGAA 87661 30 100.0 35 .............................. ACCGTAGCCGTGTCTAAAGTATTGACGGCTTTAAG 87726 30 100.0 36 .............................. TCGACATAAATAGAGCGAGCAGTTGCGGATAATTTA 87792 30 100.0 37 .............................. AAAACAGAAGTAGAAGTTTGGTTTAGGAAAGTAATTG 87859 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATAAATGCCGT 87924 29 86.7 0 .................A..-...C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTATTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCATTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGAATAAGAATCCTAAAAATCTGTCGACCGTCGGTAGCGTAGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTCACCAGATTTGAGACCGTTTTTGGAGGTTGGATTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGAGCACCT # Right flank : TTAGATTGCCCACAGATGCAGTGTCTCTATCCATTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //