Array 1 108177-106273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWL010000002.1 Salmonella enterica strain 1243 NODE_2_length_475289_cov_170.215186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108176 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108115 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108054 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107993 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107932 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107871 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107810 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107748 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107687 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107626 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107565 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107504 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107443 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107382 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107321 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107260 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107199 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107138 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107077 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107016 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106954 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106851 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106790 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106729 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106668 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106607 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106546 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106485 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106424 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106363 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106302 29 96.6 0 A............................ | A [106275] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125801-124308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWL010000002.1 Salmonella enterica strain 1243 NODE_2_length_475289_cov_170.215186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125800 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125739 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125678 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125617 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125556 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125495 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125434 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125373 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125312 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125251 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125190 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125129 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125068 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 125007 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124946 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124885 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124823 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124762 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124701 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124640 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124579 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124518 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124457 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124396 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124335 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //