Array 1 170898-170389 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGM01000013.1 Pasteurella multocida strain 68BPM isolate swab isolate 1 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 170897 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 170837 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 170776 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 170716 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 170656 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 170596 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 170536 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 170476 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 170416 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19950-22976 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGM01000020.1 Pasteurella multocida strain 68BPM isolate swab isolate 1 contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19950 28 100.0 32 ............................ GCTAGATACGCTGAAATCTAGCTATATTTCAA 20010 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 20070 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 20130 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 20190 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 20250 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 20310 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 20370 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 20430 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 20490 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 20550 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 20610 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 20670 28 100.0 32 ............................ GCTCCAGTCGCTTTTAGTTGCGCTTCGGTGCG 20730 28 100.0 32 ............................ ACTTAGAACTCCACCGGCTCTCGATTCTTCAG 20790 28 100.0 32 ............................ TCGCCAATATAAGCATTAACATTCACATCAAC 20850 28 100.0 32 ............................ GTGCCGAAATTGCACAAAGCGGACTTTGCACA 20910 28 100.0 32 ............................ TGTACCCGAAACAACTTGCAGATTAGCGCGAG 20970 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 21030 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 21090 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 21150 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 21210 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 21270 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 21330 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 21390 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 21450 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 21510 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 21570 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 21630 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 21690 28 100.0 32 ............................ ATTGCCTTTCGTTGGGCAAAAAAGAATGTTTA 21750 28 100.0 32 ............................ ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA 21810 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 21870 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 21930 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 21990 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 22050 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 22110 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 22170 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 22230 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 22290 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 22350 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 22410 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 22470 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 22530 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 22590 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 22650 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 22710 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 22770 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 22830 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 22890 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 22950 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 51 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //