Array 1 47194-49211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRGJ010000013.1 Prevotella copri strain RHA03 RHA03_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 47194 33 97.0 34 ................................A GCGCTTTCTCGATAAACTCGGCTTCCTTTACTTT 47261 33 97.0 33 ................................A TGTGCATACCATATCTGCCTTCCAGATAACTCA 47327 33 100.0 33 ................................. GCTTTAACTGGGCGCAGGTTTCGGTGGTGGTAC 47393 33 97.0 34 ................................A AGATATATTATACGATATCCACAGCGGAAAAATA 47460 33 97.0 34 ................................C CTTGAGAAGAAGAACTCGAAGTAGCGCACGCAGC 47527 33 100.0 32 ................................. CACCACGTTGGGCAGCGTTACCTGGTCCACGG 47592 33 100.0 33 ................................. TTTTCAAGCTTTAAATATCAGGGTGCAAAGGTG 47658 33 97.0 33 ................................A TATACCTTAATATATAGGGACCAGCGATAGAAT 47724 33 97.0 33 ................................A TCTGAAGAATCTGCATGTAATATTCCATCGGAA 47790 33 100.0 34 ................................. TTGCTTAATCAAAGAAAGGCAAAGCACCCGCGCC 47857 33 100.0 32 ................................. CATCCACCCAAAGGTTATAGATAGCGCAATCG 47922 33 97.0 33 ................................A TATTGTCTGCGCTTAACCGTGATGCGCCTAGGG 47988 33 97.0 32 ................................C AAAAAAGGCAGATCTTAAAAATCTGCCTTTCA 48053 33 97.0 34 ................................C AGGGCGTTTAATCGCTCCAGCATCTGGGCGAGGG 48120 33 97.0 33 ................................A TGTTGCTGCTACGGCAACTACTGCCGCTGCATC 48186 33 100.0 33 ................................. TAATGCTGTTATCTCAGCATCTAAGGAGGCGAA 48252 33 100.0 34 ................................. TAATGCTGTTATCTCAGCATCTAAGGAGGCGAAG 48319 33 97.0 33 ................................A CGAAAAAGTGCTCTCTACCATTTACCTCGCCAT 48385 33 97.0 33 ................................C TGACGGTGCAGCGTGAACAGGTGGCGGATATTA 48451 33 100.0 33 ................................. GTCTTCCAGTTTAAGCACCTCACCACATTGAGC 48517 33 97.0 33 ................................A GAGTTCGAGTTAGATGCCGCCGACCTCATTAAT 48583 33 100.0 33 ................................. AAAGACCAAGTGGAATACTCCGCAGCAGTAATT 48649 33 97.0 34 ................................G AGTGGGTAAAGGACGTGATAGATAAGGAACGAAA 48716 33 97.0 33 ................................A CGATTACATCAATCGGCTGGCAGGGTGCCTCGT 48782 33 100.0 34 ................................. CTCCACAAAGGTTCTCCTCGGTCAAAGCAAGGAA 48849 33 100.0 32 ................................. TCTGGATTTCCAACAGAAGCAGACCTTATTAT 48914 33 97.0 33 ................................C CACGTGCCTACAAATTCACCATCGGGGCAAAGC 48980 33 97.0 34 ................................A AAAACCGCTACGAGGCTGCCATCGGTCACGAGGC 49047 33 100.0 34 ................................. GAATGTCTCGCCATACCTTTCGAGCTTTGCACTG 49114 33 100.0 32 ................................. CTCGTTCCCTGCACCCTCCTTCGCTCGGTCAA 49179 33 93.9 0 .........................A......A | ========== ====== ====== ====== ================================= ================================== ================== 31 33 98.2 33 GTCACACCCTTCGTGGGTGTGTGGATTGAAACT # Left flank : TGATGATTATCCAGTATTTTTAATCAAGTAGTGTATGTTTGTATTGATTACTTATGATGTAAACATTACCTCGGCTCATGGTGCGAAACGTTTACGCAATGTAGCAAGGGCGTGTTTGAATTACGGAAAGAGAGTTCAAAACTCTGTTTTTGAGTGTATCTTGACGGAATCTCAGTTTTTCGTATTAAGGGACCAGTTAAAAGGGATTATTGATACTGAACAAGATAGTATTAGGTTCTATATTCTTGGGAAAAATTGGAAACGTAAAGTTGAGACTTTGGGTAAGGATATGGGGCTTGACTTTACTGGTGAGCTTATCATTTAATGTATGAGGGTGCGAACCTATAGTATTGCAAAATAACCTATAGTTTCGCACCTTCTTAAAATCAGTGACTTACAAATATTATGCCTTTTATAATATTTTACGTGTAATTATTTTGCCATCTTTCGCAAAATAATTATCTTTGCATCATGATATTCAGCTATTTGCTGAATATGCA # Right flank : AGAAAACAGATTTTATTTTCTGAGCCCATTTAAAAAAGTCATTTTTACGAAAACGTGCCATTGATTGTCAATAAGTTACAAAGACAAAAAATATGATTCGGGACTTTTTTAAGTGGACTCAGTTTAGTATTATACAGCAAACTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCAGCCACAGCATTCGTCTCCTTCGGTCACTGCATTCGACTCCTTCAGCTATCGCATTCGTCTCCTTCGGTCACTGCATTCGACTCCTTCAGACATCGCATTCGTCTCCTTCAGCTATCGCATTCGTCTCCTTCAGCCATCGCATTCGACTCCTTCTGCCATCGCATTCAACTCCTTCGTCTAATGCAGCCGTCTCATTCTGCTAACTCAGTCGTCTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAACTCGTGAAATGAAGTGGATGAAGTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //