Array 1 103265-106857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUA010000003.1 Streptococcus parasanguinis strain 1001254J_160919_B12 NODE_3_length_232701_cov_66.2139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 103265 36 100.0 30 .................................... TTGTATTCAAAACATTTAGCAAACGAGTTA 103331 36 100.0 30 .................................... CCAGCAAGCTTGCAAACAAGCGTCTACAGG 103397 36 100.0 30 .................................... ATGAAATTTTTTCTGTTGACTACGAAGAAT 103463 36 100.0 30 .................................... CAGTAGCGCTTTACATTAAAGCTCTCGGCT 103529 36 100.0 30 .................................... TGATTGGCTGGGCTATGTGGAAAGAGGGAC 103595 36 100.0 29 .................................... TTTTATTCCTCATAATGTTATAATTCCTT 103660 36 100.0 30 .................................... TTATATACGCCTTCACAAGATATGGCTGGA 103726 36 100.0 30 .................................... CAACGACTTTTAAGGAGCAACTATGTTTTT 103792 36 100.0 30 .................................... AGACAGAAGAGCTGAATGTGAAAATCATTG 103858 36 100.0 30 .................................... CAATCAACAAGGATGCAGAAGAAGGCGACA 103924 36 100.0 30 .................................... CTGCTTGATGCACTTAACAAAGCAGTCAGT 103990 36 100.0 29 .................................... CATACCTCTGGTTCAGGTAATAAACCGTA 104055 36 100.0 29 .................................... TTATGGATAATGTCCATGCCAAAGATGAT 104120 36 100.0 29 .................................... TGAGAATGAAGATGGCAAAGAGAATCAAG 104185 36 100.0 30 .................................... GTACGAAATATCAGAAATCACAAGGTTTTG 104251 36 100.0 30 .................................... ATCACACCCAACGAAGGGCGCGTGGAGCTT 104317 36 100.0 30 .................................... AATGAAGTCTGGAATAACCTGTTTGACTGT 104383 36 100.0 30 .................................... TAAGTAGGTGTAGTCATTATAAATTCTCCT 104449 36 100.0 30 .................................... AGGAGCGTATTGAGACTATATCAAAGAATA 104515 36 100.0 30 .................................... AGCACATTCGCAAACGTGCTGAGTTTATTC 104581 36 100.0 29 .................................... TGCAGCTATCGTTTCACGAGTTCAAGCGC 104646 36 100.0 30 .................................... TGCGTGGTTTTGAATTTGGTGAAGTTAACG 104712 36 100.0 30 .................................... ATGGTTTGTCCAAAAAGTTTTTTGCGACTC 104778 36 100.0 30 .................................... AAGTCAGCGGTGGATATGCCCAAGGTATCA 104844 36 100.0 30 .................................... AAAAGCCTCGACTGATAAGCAAGTAGGCCA 104910 36 100.0 30 .................................... CCAGAGGCGGTTGCTGCTTGTGCGATTGCT 104976 36 100.0 30 .................................... GGCTTGAATGTGAGCTTGCAGTAGTAAGCA 105042 36 100.0 30 .................................... CAGACGACTGGCAAGGGTGTGTTTGACATC 105108 36 100.0 30 .................................... AAGACAGATAGTGAAGCGAACCTTGCGCAA 105174 36 100.0 30 .................................... TTAAGACTTTCACGGTATCGAATGAGATAG 105240 36 100.0 30 .................................... CACACAGTGGTCGATATGCTTGGGGATCTG 105306 36 100.0 30 .................................... TCCACCTTCTTATTATTGGGAAACAAGCCC 105372 36 100.0 30 .................................... TTCATTTTAAAGAAGTTGACCACTTGGGTA 105438 36 100.0 30 .................................... ATGGTCGGACGTGGGACGCGTCTCTTCCCG 105504 36 100.0 30 .................................... TTTATTTTCTTTTTGTGTGCTATACTATAG 105570 36 100.0 30 .................................... TAACTGTTGTAAACATATCCTTTTTGTCGA 105636 36 100.0 29 .................................... CGGGGCAGGAATCGAACCTACATTATACG 105701 36 100.0 30 .................................... GGCATACGGAAAGAGTAAATATAACGCGTA 105767 36 100.0 29 .................................... AAGTAATTACAAGTTTACCATCAACAGTA 105832 36 100.0 30 .................................... AATTCGGACCGTGTTATAGATTTCTTCTTA 105898 36 100.0 30 .................................... TCAATCCGTTAGACGGCAAAGGAGCCAAGA 105964 36 100.0 30 .................................... AGGACGACGAAAAACGTCAAGCCTTGATTG 106030 36 100.0 30 .................................... TTGGCATGTACTCCCCTCCTTTCTTTGTAA 106096 36 100.0 30 .................................... TGATGGAAATGCGAATAATGTTCTTTTTAA 106162 36 100.0 30 .................................... GTAAGCTGGTCAAGCGTTTCACCGTTATAA 106228 36 100.0 30 .................................... AAGCGTGCCGTAGCACAAGCGGAACAGCAA 106294 36 100.0 30 .................................... ACCTATATTTAAATTTTTCTTTGTTGGCTT 106360 36 100.0 30 .................................... AACAAAGTAGAAAAAGGTAAAGGCTTCCTC 106426 36 100.0 30 .................................... TTGTGACTTTATAATTAAAACTAGATTAGT 106492 36 100.0 30 .................................... TTTTTAGTTTTCATCGTGTTATAATTTCCT 106558 36 100.0 30 .................................... TGGACAATGCGACGCTATACCGCGAGCAAG 106624 36 100.0 30 .................................... AAACTTTTAACCCTGATAAAGTCCTAGTTT 106690 36 100.0 30 .................................... CGGATCCTGAAATGGATGAAATTATTGTTC 106756 36 100.0 30 .................................... ATTTTGATGAAATGCAGAATCAATTTCAAA 106822 36 86.1 0 ......A.........A..........T....T..G | ========== ====== ====== ====== ==================================== ============================== ================== 55 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTATTTATCCTATAAGGAATTCGTTGAGTGCTGTGAACAATTAGAGCAATTAACCATTCATTGTAACATGTTATACACTATTTCATTTCCTTCAAATGAAGGATATCTTCATGTCACGAAAGAAGTACTAGAGGAGATTAATATTGTTTCAGATTACGTTGATCATTTTTATTCATTAGAATTTATGTACGAACGTTTTACTAATCAATATCCAATAAATCAAATACCTAATAAACAAGAGTTTTTATCATCTTTAAGGAAGATTGGACCTTATTTATTTAGTTCTGACATTCTTCATATGAGTTTATCAATTGAGGATCAAGTAGCATTGAGAATTTTAAATAATTTGTACCAGTATGAAATGAAAATAAAATTCCGTATTGAACCAGTCAATCCAATGTTATTGAAGTATTTAGAAGAATAGTATTGACGAGTTAGGTCTAAGTCTTTATAATGGTTTTGAGCTACAAAAACCAAAATTGACGAATTTGAG # Right flank : GTAATATATTTTTTTGTCTCATCACAATTATAAATTTCCCCCCTCCACTTTTTCTTTGACTCTCCTTCCTTATTTTTCTAAAATAGTAGGTATGTGAAGGGAGATTGATATGAAAAAAGGTTTGGTTATTGTGCTTTCTGCTTTGGTCTTGGCTTCGTGTGGTCGTCCTCAGAGGACGGTGTCGCCAAAGAGTTCGGATACCAAGCAGACCAGCACTTCGGAAAAGAAACAGTCTGGTATGGATTTGAAAGCCATTAAGGCTAAGGACTACTCGAGTATCAAGGGGACTTGGATCGATGGTCGTGGCAATGAGCTGGTCTTTGATGACAAGGGCTTGGTCAGCGAGGATGTCGAGCTTGATGCATCGAGCTTTAAGCAGAAGGACCAGATCGCTGAGATGACGGTTAGTGCCAAGTCGGGTGTTGGAGGCTATGGTCTCTTGCTCCTTCCAAAAGGTCAGAAAGCGGGCAAAGACGATGCTTCGGATAAGTCTAAGGATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //