Array 1 7286506-7284968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNC010000001.1 Actinoplanes lobatus strain DSM 43150 Ga0104563_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 7286505 28 100.0 33 ............................ CGGGTAAGCGCCAACCCCGCGCCCTTCGCGGAG 7286444 28 100.0 33 ............................ TGCTCGAGCAGGTCGACAAGGCCGCCAAGCGGT 7286383 28 100.0 33 ............................ GTCAACCCGAACGGGCAGTGGGGGTTCGTCGAG 7286322 28 100.0 33 ............................ TACGACTCGGACGGCAACGAGGTCTACCCGGAC 7286261 28 100.0 33 ............................ CCGGTCACTCGGCGTCTTCACGGCGCAGGAGAT 7286200 28 100.0 33 ............................ GCCGAAACCAACATCGACTACCTGCCCCGCTGC 7286139 28 100.0 33 ............................ CGATGCCGTGTCGCACAAGACCCCCACCTGCGC 7286078 28 100.0 33 ............................ CGGCAAGGTCACCCCGCAGCTGCTGGCCAAGTT 7286017 28 100.0 33 ............................ CATCGCTCCGCGGTTCGTCCTGGACTGGCAGGA 7285956 28 100.0 33 ............................ TCTCTTCCAGGTCGGGGGTCGGAGGGGTCGTTC 7285895 28 100.0 33 ............................ CGTCTTGGCGGCGGCGAGGCTGGTGGTCTCCGC 7285834 28 96.4 33 ....C....................... GGCGTGGATCTGGTGCACCGACACCAGCACGGG 7285773 28 100.0 32 ............................ GAGGGCTGCTGTCGCATCGTCGTGTGCCTTAC 7285713 28 100.0 33 ............................ GGCGTACCAAGACCGCCTGCACATGCTGTGGGA 7285652 28 100.0 33 ............................ GGACTGCTCCGGCAGCATCCGCAGCGCCTTCCA 7285591 28 100.0 22 ............................ GTGCACACCCTGAGCTGAGCCA Deletion [7285542] 7285541 28 100.0 33 ............................ CGGACCAGGGCGTTTCATACAGCGATGGCCGGG 7285480 28 100.0 33 ............................ GGCGTGGGGGCCGCGGATGGACGACGTCATGCG 7285419 28 92.9 34 .C.........A................ CTGGACCGGCCTGGCCTGCGGCTGCGAAACCGCC 7285357 28 100.0 33 ............................ CCAGGCGCTGATCAGCCCCGTGGTTTCGGCTGT 7285296 28 96.4 33 .........................C.. CTGAGCAACTGGCCGCCCAGGTGCGCAGATCAA 7285235 28 100.0 33 ............................ CACGACACCACGATTTCACGTGAATACACCACG 7285174 27 96.4 33 .....................-...... GGCCGCGGTCGTACTCCGCGCGGTACGGGAGCG 7285114 28 96.4 31 ..............T............. GCCGCTCGTACTCGGCGCGCCGGCGCCAGGC 7285055 27 96.4 33 ........-................... GGTGGCGAACGTCTACCTCGGGATCTGGGGATA 7284995 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 26 28 98.9 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGCCGGCGCACTATCGCACACCGAAAACGCCCGCGTCGCCGGTCGAGCATCCAGCGCCGGCAGCATCATGCGCCGCATCGACGTCAAACGCCTAGCCATCCCCGTCCTACCCCTCGGCCAGCAGCGAGCCTACGGCCAAGCCTTCCAGCACCTAGCCGAATTCCAGGCAAGACTCCGCGAGGCCGCCACAACCGGCGAAACACTGGCCCGAGAAATCAACGACGGCCTCTTGAAAGGGTCCCTCACAACCGGTGCGGATTCCTGAACAAGCGGATGATGGCCAGCGGCCAAGAAGGAGACATTGGGATGGCCGCAACTGGCGGACCCCCTTCGGCACCCAGCAGTGCAGCAGGCCGCCAACGAACCTCGTAGGGTTGTCATGACGGTGCTGCTATCGACCGTACGGTCGGCCGACAGGGCAGGCCAACGTAGACTATGGCTGGCCCACCTAAGTGAACAAAAATCGAGTTCTTGATCTCCAAGACCGCAGGTCAGTTAGT # Right flank : GCTGTAGACGCCGGTGGTGCCGTGCGACGCCGTCTGCTCCTGTCAACGGTCAAGACGAAGTGGATCTGGCACGGCCATGGTGATCGGCGGACGTTGATGTCAGTCGGCGAGGATGATCCGGTGGCGGAGCAGGTCGGTGTTCGCGCGGCCGTACATCTGTCGTTTCAGCATCTTTATCCTGTTCACGGCGCCTTCGACGGGTCCGGAACTCCAGGACGTGGTGAGTCCGGCGGTGACGGCGGTCCGGTCCCGGCGAAGGCCGTTGGCGAAGGAGCGGATCTGCGGGATGGACTCCTGCTCGGCTCGGGTGACCCAGGCTTCCAGGCGGTCGCCGCCGCGAGTGCGTAGCAGGTCGGTGAAGCCGTGGGCGAGGTCGCGGATGGTGCTGAGGTCGGGGCAGAGCTCGCAGAGCCGTTGGAGTTGTTCCTGGTCTTCGCTGGTGAGTTTGCTGGTCGGGCGCATGATCCGGCCGGTGATTTCGCGGGCTTTGGGAATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 7302529-7304510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNC010000001.1 Actinoplanes lobatus strain DSM 43150 Ga0104563_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 7302529 28 100.0 33 ............................ CCACCTGTCCGCGGTCGTCGACAACCCGGAACG 7302590 28 100.0 33 ............................ CCGACGTGGATGACGGTGGCGATCGCCGCTGAC 7302651 28 100.0 33 ............................ GTGTCGTTGATCTGACTGTACGAATGGCCGAAC 7302712 28 100.0 33 ............................ CCGCTACGTGACGATCGTGGGCCCGTCCTACGA 7302773 28 100.0 33 ............................ CTGGCGCAACGTCGGCCTCGCGATGCGGTGGGC 7302834 28 100.0 33 ............................ GGTGGAGCGCATGACTTCTGCCAGTGAAGGGAC 7302895 28 100.0 33 ............................ CGGTTCTCACAATCAATTCGTCTCACCCCCTCT 7302956 28 100.0 33 ............................ GGAGCTGCGTGATCGAGGCCGGTTGCACGAGAT 7303017 28 100.0 33 ............................ GACGCGGATCAGTTCGGGCAAGAAGTCATAGCC 7303078 28 100.0 33 ............................ CCAGATCCCGGCCATCCCCGGCGGCGAAGGCGG 7303139 28 100.0 33 ............................ GGCGATGATCCTGGCCGACCTGCGCGGCCCGCT 7303200 28 100.0 33 ............................ GCTACACCGGGGGACGGCGCGCCAACGGACTAC 7303261 28 100.0 33 ............................ CTCTCCCGGCGTGTCGCAGGATCGCCACCGTAA 7303322 28 100.0 33 ............................ TCAGAATGCAGACCCGACCCGTCCGGAACGCCA 7303383 28 100.0 33 ............................ CTCCTACGGCGGCGCCGACGTCTCCGCTGGCCG 7303444 28 100.0 33 ............................ GTCCACACCGAAGGTGGCGGGCTGGTCGAACGC 7303505 28 100.0 33 ............................ TTCGAGTGGGCACCGGTGGCCGAACGATCCGGC 7303566 28 100.0 33 ............................ CTTCGGCAAGAGCGCGTCGAAGCCGAAGTTCAT 7303627 28 100.0 33 ............................ GGTGCCCGCGTTCGGGTTCGGCACGAACTGGTC 7303688 28 100.0 33 ............................ TCCAGGGGGCGTGTTGTCAGTGCTCACGGGTCA 7303749 28 100.0 33 ............................ GGTGTCTGACCTATCCGGACAGAAAGTGGCCCC 7303810 28 100.0 33 ............................ CGCCAAACGGTACGCCAATACCGTGCACTACTC 7303871 28 100.0 33 ............................ GTCGACGTACCGGAAGACGATGTGGGTCAGGCC 7303932 28 100.0 33 ............................ GGCCATGGAGGCCTGCGGGTCGTCGGACTTAGC 7303993 28 100.0 34 ............................ GTTCCGCGCGGGTGTGCAGCCGCATCAGGAAACC 7304055 28 100.0 33 ............................ CGCGCCGGGCCTGATCGTGGTGGTGGGCCAACC 7304116 28 100.0 33 ............................ TGGGCGGGGTGGTGTCTGCGGGCGCCGAGTCCA 7304177 27 96.4 34 .....................-...... CGCGCCGGCCTTGACGACCTCGGCATCGGCGAGC 7304238 28 100.0 33 ............................ CTGACCGCCTACACCGTTCGGATACTGTGCGAC C [7304255] 7304300 28 100.0 33 ............................ CGGCAAGAACGCGTGTTCAGCGAGGAACCACCG 7304361 28 96.4 33 .........................A.. CACCGGTCAGTGGGTCACGGCGAACGAGGTCAC 7304422 28 82.1 33 .......TTT.A.....A.......... GGCCACATGCGCGCCGACATCTACATCCGGGTC 7304483 28 82.1 0 ...T..........CA.....A.....T | ========== ====== ====== ====== ============================ ================================== ================== 33 28 98.7 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : CCGGCTGTGGGACGAGGGCGGTTTCGAGGTCACGGCCGGCCGCAATTATGCCGACGTCGGCGACGTGGACTTCTGATGACCGTCATCATTCTCACCGCCTGCCCACCAGGGCTGCGAGGGCACCTCACCCAATGGCTGCTGGAGATCTCCGCCGGCGTGTACGTCGGCCACATCAGCACACGAGTCCGCAACCGCCTCTGGGCGCGGGTTGTCGACATGGCCGGGCCCGGACGAGCGCTACTGGTCTACCAGAAGCGCGGCGAGCAGAAGCTCTCCTTCGAGGTACACGACCACCACTGGGAACCGGTCGACCTGGACGGCGTGACACTGATCCGCCGTCCCGGAAACGCACCGTTCAATCCGGCAGCTCCGACCGGCTGGAGCAAGGCCGCCAAACGCCGCCGGTTCGGGCGCCCCGGCCGTCCAGCGTAGGCTGTACCCAGCGAGAGCAAGTGAACAAAATCCAGGATCCTGATCTTTAACGCTGCAGGTCAATTAGT # Right flank : TTGGACGGCCGGCACGCTCACCCGTGGTGGGGCCTGCTCTCCGGCGTTCGACCTCGACACGAAACCATCGTCTCCTGCTCACCCAGCAGCCGCAGCACCCCGTCGCCCCCACAGGCCACCTTCAGCTGATCGCCGGGTTACACCGGACACCGGTGGTCAGTTGCCGCTGCTTAAGCGCGGCCGGGGGCCGCATTAGTATCGGATAGCCGGCCGGGGCGATGTCCGAGATCCTCGGACCTGCGCAACCGTGAGAGCGATGACCTTCCCGGGGTCGGCCGCGTCCTCGGTGATCCGGCGGCGGACGGCCAGGACCCCGCTGACCAGGCTCGCCTCCGGCCATCTCCCATCGCCGGGTTCGATCGAGGTGAGGGTACGCCGAAGGCCGTGAACCACCCTGTCCAGCCCCGCGGGTCACGCCTGGCGACCGTGCGGCGGGCGCGTGCCACCAGCGCGGTCGACTGGGCGGCCTCCCGGAACGTCTGAATCGGGAGTGTCAGCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 7308697-7310386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNC010000001.1 Actinoplanes lobatus strain DSM 43150 Ga0104563_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================== ================== 7308697 29 100.0 32 ............................. AACATCAGCGAGCACTGCACGGACTCCAACTG 7308758 29 100.0 32 ............................. GAGCCGACCGCCAGCGTGCGCCTGTCAATCGT 7308819 29 100.0 32 ............................. TGACCGATGAGGCTGCCGCGCTCGGACTGGCT 7308880 29 96.6 32 ............................G GCGGGTATGCAGCGGGCGAACGCCAAGGCCGC 7308941 29 96.6 32 ............................G GGAACCTGGTCGTCGCCGGGAACATCACCATT 7309002 29 100.0 32 ............................. ACAAACCAGTCCATGCAGGCGATCCGGCGAGC 7309063 29 100.0 32 ............................. GGCGTCTCGCCGGCCCGGGACCGCGGTGCCGA 7309124 29 96.6 32 ............................G TGGTCGGCGATCTTCCCGGGAATGGTCTTCAG 7309185 29 96.6 32 ............................T CACTCTCCGCAGTCACTGGGCTGGCCGGTCGA 7309246 29 96.6 32 ............................G CTGAATCCGTCGGTCAAAGACCCGAACAAAAT 7309307 29 96.6 32 ............................A CGTCCAACCACGGGGCCGTTTCTTGAACGGAT 7309368 29 96.6 32 ............................G GTCGCGAAGCTGATCACCGACCCCCGGCCGGG 7309429 29 96.6 32 ............................G GATCATGGAGCACGCCCACCACACGCTCGGCC 7309490 29 96.6 32 ............................T ACGGAGTGACCAGCACATGACCCAACCCATCA 7309551 29 100.0 32 ............................. ACCTGACCGGCCCGTACCGGGTTGCCGACGTG 7309612 29 93.1 32 .........................T..G TACTGGTCGGTGGTGCGGCCCAGCAGCTGCAG 7309673 29 96.6 32 .........................T... ACGAGGTTCGCGACGCCGACCGGGTGCTCACC 7309734 29 93.1 32 .........................T..T GCGGAACACTCGGCCCGGCAGGTCCGGGTCAT 7309795 29 93.1 32 .........................T..G TCGAGCGAGTCGCCGGAGGTGTTGGAAACCAG 7309856 29 96.6 32 .........................T... CGTGCGCCGCTGGGACCGGCTCGGCCGCCGGT 7309917 29 96.6 32 .........................T... TTCTTCGCGCTGACGGAGACCCGCTGCGAGCC 7309978 29 89.7 33 ..........A..............T..G GTGGCGGATCCCGCGCCCGCGGCGGTAGCCAGC 7310040 29 96.6 32 .........................T... TCTGGCTCGGGGCGCGGCCTGCTCAACGGGCC 7310101 29 93.1 32 .....................G...T... TGTTTGGAGGTGAGCAGGCCATCCTGGACCTC AC [7310116] 7310164 29 86.2 165 ......................GC..GA. GGCCCGCATCGCGACAACGACCGTTGCCGGGGGGATCACCCGTCCGCGCCCCGCGTGCGGGGAGCAGTTCCTGATCAAGCGGGAGCTGACTGGGGGAGTGCGGTTCACCCCGCGTGCGCGGGGGAGCAGATGAGAACGAAAATTGTTTCCATCAGGCCCATAAGG 7310358 29 69.0 0 A..AC.......T.........GC..TGA | ========== ====== ====== ====== ============================= ===================================================================================================================================================================== ================== 26 29 95.1 37 CTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCACGTGGCCGCGCCGTGATCGCGCACCTCGAACGCACCCGGCTCTGGCCCGGCGCCGCCCGTGATGCCCTCGACGCCTGGACACGCTTCCTGCGCGACCCCTATCACCGGCTGTTTGACCCGGCATCCGGCTGCGGGGTCCTTGCCTGCTGCCCCGATCCGATGGAGCTACGCCGCCTGCTGCACATGGTCAGCCAGGCCCTGCCACGACGCGATGCCCGCGAACTTCGCCGTCATCTCGCTGAACTGGACGAGCAGTGGTGAAGCTGGGGCATGGCGAAACTCGCAGCACCACCCAACACGATCACGATTTGTGCACTTTGTACGTACCTGGCGCTCGGGTTCTAGACTTCGTGCCAGAGCTTGTTCTAATCGACCAACGTCACGCCGCGAAACGCCGCTGGCTCGGAGGTCCCGGCCGCCCAGCGTAGGCTGTACCCCAGCAAAGGCAAGTGAACAAAATCTAGGACCCTGATCTTCAACGCTGCAGGTGAATTAGT # Right flank : AACGTGCTGGATCGCGGCGAGGACGGCCAGGGGATCACCCCCGCGTGCGCGGGGAGCAACTCCACGGTACGGCAGCCGTGACAGATGATGATGGATCACCCCCGCGTGCGCGGGGAGTAGGAGGCCCGCACCGACAAGACCGCGACGGGCAACGGATCACCCCCGCGTGCGCGGGGAGCAGTAGCGGCATACCGCGCCCCTCTGAGGTTCCACCCCGGGACCGGACACCGGAGTTTCATGCCGCGAGGGCGATGGGTGGACGATAACAGACACGCGCTTCGCGTGGTGTCTGATAGTTCGTGGTGGAATGCAATCATTGGTTGTTGTAGTAGTTGATGCAGGCGAACACCTTCCGGCGGGCCTCGGCACGGGTGGCGAAGACGCGGGTGCCGATCTCGGCCTTGAGGCTGGCGAAGAACAATTCAGCGCCAGCGTTGTCGAAACAGGACCCGGTACCGGCCCATTGGCGGCCGCATGTCGAGCCTGGTCAGCGTGGCGCG # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.48, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //