Array 1 33042-32714 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGJE01000059.1 Pseudomonas aeruginosa strain EML545 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33041 28 100.0 32 ............................ GGGTTTCTATCGCTATCCCGTCGGCGCCTCCG 32981 28 100.0 32 ............................ CTTAGCGATCAACTGATCAGCGATAGTCCTGT 32921 28 100.0 32 ............................ TGGACCGTCAGCATTGGCACGGACGGCCCACC 32861 28 100.0 32 ............................ AGTACGAAGCCGCCATGGCCGAGTGCTGGTAC 32801 28 100.0 32 ............................ AAAAGAGGGGCGCGATAGGTGCGACATTCCGG 32741 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGATGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGATATGTGATCCATACGAGTCCATTCGCGCGCGAACGGCGAGGTTTATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAAGGCCCGAAGCTTCCGACCCTTTTTTCGGACAGTTTCTTACACCCTTGAAAATCAATGGCTTGCAAAGGCTCGAAAAAAGAGGGTTTCAGGCCGGGAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCTGGGCTA # Right flank : AACGGAGGCTTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTACTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGCCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATCACGCCGTCGCGGCTCCAGCCCATGATGTCGTAGTCCTGGCCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCCTCGCCATCCTGCACCTGGACTTCGTAGCCCTGCTTGCGCAGTTCGCTGGCGACGTCTTCACAGGCCGGTCGCGCCACTTCGGAAATGAAGCGGTTGACGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 124977-125364 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGJE01000008.1 Pseudomonas aeruginosa strain EML545 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 124977 28 100.0 32 ............................ TGGAAGGAAGAGATGGACGACTTCGACAACGA 125037 28 100.0 32 ............................ ACGGGTAGAAGTGGAACTTCAGGTCCTTGTTG 125097 28 100.0 32 ............................ AGTTGGTATGGCGCGGCCAGATCGAGATGGCC 125157 28 100.0 32 ............................ TCGGCGCGCGATTCCAGATGCGTCGCGTCAGC 125217 28 96.4 32 ....C....................... GATCCGCGAAAGCGGCCTGCTGGTCACGCTGG 125277 28 100.0 32 ............................ TCTCCACCCCAGCTATTGCCGGGGAGGGCATG 125337 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCAATTCGCGCGCGAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGAGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : ATCGCGAGCGATATAAATCCATAGGGCACCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTTGGCCTCCAGACGGTAGGGCGGCGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGTAGGGGGACGAGCGGCAGGAGGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGGGCCCCCGGAGCGACGATGTAGCGAGGGAACCCCAGTCGCGTAGCGGCTGGGGCCGGATGCAGGGGCAAGCGCTTTGGTTACTTTCTCGCGACTGAGAAAGTGACTCGCCTGGGAAGGCGAAACAAGAGGTCGAGGCAGGCACGACAAGCAGCTAGACCGCCCAGCCAGAAGCCCGCTCAAGCTTTAAGCGACATCCTTCCCCAGCTGTTAACTGCCGTGTAGGCAGCTAAGAAAACGGTCCCTTGCTCGCGCCGACCAGACGTCCCTTTCACTGCCGCATAGGCAGCCTGACTTCCCTCGGACTCGCAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //