Array 1 209614-208805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAQ01000015.1 Pseudomonas aeruginosa strain AZPAE12146 AZPAE12146_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 209613 28 100.0 32 ............................ CGTAGTCAGATCAAGATCACTGCCTTCAGGAC 209553 28 100.0 32 ............................ TTGCAGGACGACTCGAACAGTTCGCGCTGACG 209493 28 100.0 32 ............................ CAATCGGAGATCCGCACTTCGGCGAGTACATC 209433 28 100.0 33 ............................ ATTGGATAACAGCGGTGCCCTTCGGGCCTTCCA 209372 28 100.0 32 ............................ AGCCATCGAGGTTCAACCCGGCGATCACTCGG 209312 28 100.0 32 ............................ TTCACCGGGGTCGTCCAGGCCACGTCAACACC 209252 28 100.0 32 ............................ TGAAGAAATGTACAGGCTGGACGTATTGACAG 209192 28 100.0 32 ............................ CTTGTCGCGGATGTACGCATCGCCCCAGAGGT 209132 28 100.0 32 ............................ ATCGTACCGCCGCGCTGCAAATCGAGGTCGCC 209072 28 100.0 32 ............................ ATGATGGTTTTTCGGTTCTGTCGGACACAGTC 209012 28 100.0 32 ............................ GCGGGAATTTCACGGCGAACAACTCGCCTCTC 208952 28 100.0 32 ............................ GGGGAGGGTTGCGCCAGGGCGGCGCGGGCCTC 208892 28 100.0 32 ............................ TTATGGGCCGCCTGGGCATCGATATGAAGAAC 208832 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21280-22327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAQ01000013.1 Pseudomonas aeruginosa strain AZPAE12146 AZPAE12146_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21280 28 100.0 32 ............................ TGCGCATACTTACCACCTCGAAAAGATCGCCC 21340 28 100.0 32 ............................ TGCTGCTGGAGAAAGCGGCCACGAACTACCGG 21400 28 100.0 32 ............................ AACTTCTTGATGATCTGTCGGTAGGAGACCTC 21460 28 100.0 32 ............................ CGTCTCCCCCGCCATCACCACCGCCACCCGTG 21520 28 100.0 32 ............................ GTGAGGCATCCGCAAATAGCGCCTTCGAGGAT 21580 28 100.0 32 ............................ GAGCAGCGTGGAAATCAGGGTGTGCGATTCGC 21640 28 100.0 32 ............................ TCCGGGACTTCATCCGCAGGGTGGTCGTGCTC 21700 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 21760 28 100.0 32 ............................ ACCGGCAGGACGTGATCGAGGTCGGCGTGCTC 21820 28 100.0 32 ............................ AGATCGTGATGCCTCCTGCATGCGAGAAGGGC 21880 28 100.0 32 ............................ CTGGAGCGTGCCAAGACCCACCTTGGCATGGA 21940 28 100.0 32 ............................ TGGACCTGGGCAAGCTGATGAAGGGCCAACTG 22000 28 100.0 32 ............................ TGCCGCCGCTACGACTTCCAGACCATCACACC 22060 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 22120 28 96.4 32 ................A........... GTCGAGCAGTTGATAGAGGAAATGCGCCGACA 22180 28 100.0 32 ............................ ATCCTGCGTGCGACCTCTTTCGCGGTCAGTTC 22240 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAACTGGTTGTC 22300 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTTTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32326-30852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAQ01000013.1 Pseudomonas aeruginosa strain AZPAE12146 AZPAE12146_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32325 28 100.0 32 ............................ GTCATCGGCGGAGCCGGTACGGCCGTCTACAT 32265 28 100.0 32 ............................ AAGGACTGGGGCGAGACAATCCATCGCTATTG 32205 28 100.0 32 ............................ ACGTCCATGCAGAACTCGAACGTCGTGTGCAT 32145 28 100.0 32 ............................ CGCCGAAGTCGAAGCTCCTGCGTAGCACGGCC 32085 28 100.0 32 ............................ GCGTAGACAAGAAAAACCGGTCGATGCGGGTT 32025 28 100.0 32 ............................ AAATCACGCCGCCCGAATGCCACTTCGGACTC 31965 28 100.0 32 ............................ TCAACTGGGGAATGTCTACTTGCGAAGACTGC 31905 28 100.0 32 ............................ TGCTCCGGAAGGTACTGAAGCGCCCAGGTCGG 31845 28 100.0 32 ............................ AGCATTCGCAGCCCTGCAATGGGGCTGCTCGT 31785 28 100.0 32 ............................ TTAAGCCTCAATCGAAGTTCCACCCGGCTTGT 31725 28 100.0 32 ............................ AGGTGCTGGCGTCGATTGTCAGCGCGGTCAGA 31665 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 31605 28 100.0 32 ............................ CTCGACGGGGCTTGGCGCACCGGCGCCACTCC 31545 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 31485 28 100.0 32 ............................ AATTGCGGCACGATTGAGGATCACCCAAGCTA 31425 28 100.0 32 ............................ ACCGTGATTGTGCCCATGCGGCGCATGTGCAT 31365 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 31305 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 31245 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 31185 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 31125 28 100.0 32 ............................ AGCAATGCGATCCGAGGACTCCAGAACGGTAT 31065 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 31005 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 30945 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [30921] 30879 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //