Array 1 423404-425445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDM010000001.1 Salmonella enterica isolate 4948_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423404 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 423465 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 423526 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 423587 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 423648 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 423709 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 423770 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 423831 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 423892 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 423953 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 424014 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 424075 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 424136 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 424197 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 424258 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 424319 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 424380 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 424441 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 424502 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 424563 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 424624 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 424685 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 424746 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 424807 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 424868 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 424930 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 424991 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 425052 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 425113 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 425174 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 425235 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 425296 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 425357 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 425418 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441578-442564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDM010000001.1 Salmonella enterica isolate 4948_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 441578 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 441639 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 441700 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 441761 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 441822 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441883 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441986 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 442047 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 442108 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 442169 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 442230 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442291 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442352 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442413 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442474 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 442535 29 96.6 0 A............................ | A [442561] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //