Array 1 148214-149464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJED010000013.1 Pseudoalteromonas luteoviolacea strain MMG019 assembly_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 148214 29 100.0 32 ............................. TACCCTGCTGATTATTTTCCATAGGAACCGCC 148275 29 100.0 32 ............................. CATCGTAAATGTACTTGCAGAAGCCATTGATA 148336 29 100.0 32 ............................. CGTGCCTTGTGGACGGGTACGGGAGCAAAGCA 148397 29 100.0 32 ............................. AACAGGTACAGCGCTTAAAATTGATCTACCGG 148458 29 100.0 32 ............................. TGCAATCAATCTGAGCAATAGTTGCATGTTGA 148519 29 100.0 32 ............................. GAGTTCAGTCTGTGTTCCCCTACTATTCAATT 148580 29 100.0 34 ............................. TGGGTAAAGCACCTCTAGTGACGCCTTTTCAACC 148643 29 100.0 32 ............................. CGTGGTTAGTACATGAACATGATTGCGAGTCA 148704 29 96.6 32 ............................A GTAAAAAAGTTGCTGAACAATAGAGAGTTTCA 148765 29 100.0 32 ............................. CGATGAGCTGCTCTAAACGTTGCGTTGTAATG 148826 29 100.0 32 ............................. CCTCAATATATTGTGCTGTTAGATAATGAAGT 148887 29 100.0 32 ............................. GTTCTAGATTTAGCATTTAGTTATATGCACAT 148948 29 100.0 32 ............................. TTGGTATGCAAGTGCGATTCAACAGAGATTAC 149009 29 100.0 32 ............................. CGTATTGTATTCATCTACCTCTGAGTTGTACT 149070 29 100.0 32 ............................. AAGCCAATAATGGTTCTAACACCAACACCCGC 149131 29 100.0 32 ............................. GTGATAGCGGCCTTGTAGACCTTCGTGAATGT 149192 29 100.0 32 ............................. ATTTAATCGCACAAATTACTGCTATCGAAAAT 149253 29 100.0 32 ............................. TTCCTATGATAGAGCCTGCTGATGTTATTGGT 149314 29 100.0 32 ............................. CTGTGGCTCCTCTTTGTGTCAGGGTCAAATCA 149375 29 100.0 32 ............................. TATTTACAGGCAGTCAAACTGATCTGGCGTTA 149436 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 21 29 99.8 32 GTGTTCCCCGTAGGCACGGGGCTAAACCG # Left flank : CCACTATGTGGCCTTTTTAAATCAATACTCCACCCGAATTTTGCCCGGTTCCGACTTTGTAGCAACCGACACCAAACGCTTTAAACACTATGCCAAAGAAGTTGAACTCACGAGTTACATCAACCAATTTTTAGACAATAACGCATTTCGCAATATCGCCCTTGGCCAAAATTACTTTGACCTGATGAATTTGGACTTCGAAGCCCCCGTGATTTGCGAGGAGTGAAGGTGTATACGTTTAATGAAAAGCTAAATTTATAATGTAAAACATGTCAGATATTTAAGTCTGTATCTTTTTTAATCAAAAAGATAAGGTTGTAAGTGCTTGGAGAGCTTTTACTTATTTAGAGTAAAACTGATTTGTTCTTTAAAAATTTGGGAAATAAAGGGGAGGGTTTTTGTATACTTCAGTGTTCTTTGGCCCAAATTTAGTACCCATAATTTTTGGTAGATTTTTAATAACTAATTTTACCTAAATAAATCAATGATATAAATTTAGA # Right flank : TCGTCATAATTAATGGTCACAACAATAATCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 378718-375572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJED010000004.1 Pseudoalteromonas luteoviolacea strain MMG019 assembly_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 378717 29 100.0 32 ............................. TGCATCGATAGATGTTTGTGTTGATACACGAT 378656 29 100.0 32 ............................. CCTTATAGCGTAATGACCGTATGTTATATGTA 378595 29 100.0 32 ............................. GGTGTTGTTTAAACACAAAAATACTTATGTCT 378534 29 100.0 32 ............................. GTATTGCGCACGGTGGTCTTGGCTATGTGCGT 378473 29 100.0 32 ............................. GTATTTGAAGGTGAACTCAATTTAAATATTAT 378412 29 96.6 32 ............................T TTACTAATGTCGATAGTGACTGTTTATAACTC 378351 29 100.0 32 ............................. ACTTAACTGGCATTCGGGTTAACACAGGCAGC 378290 29 100.0 33 ............................. CAAACGATTGAGCTGTGCGCCATCTAGCGTAAA 378228 29 100.0 32 ............................. GTTGGGACGAAGTAAAAGCAACTACACCTAAA 378167 29 100.0 32 ............................. TAATGGGGGCAAATCTCAATATCAAAATAGAC 378106 29 100.0 32 ............................. GCGAGAAGGGCGAAATGGGCGCAAAGGGTGCT 378045 29 100.0 32 ............................. CAGTTTATAGTTCAATCGATAACTTGGACGAA 377984 29 100.0 33 ............................. CGAGATATTCAATTACGCGGTACTGGTCAATAC 377922 29 100.0 32 ............................. GAATTCGCTCTATGTATATGAAAAATAACAAT 377861 29 100.0 32 ............................. AACTGTCGAATATTGTTGCTTTCTATGTTGAT 377800 29 100.0 32 ............................. GGCTCCGGTGGTTAAGGGGTACCTATAGGGGC 377739 29 100.0 32 ............................. TATATAAAATGCTTCTATACGCTTCTACATAT 377678 29 100.0 32 ............................. ACTTGTTTTTTATTTTTAGTAAATGACATTTC 377617 29 100.0 32 ............................. GGTTTATCAGGATTGAGCTCGTTGTACCTTGC 377556 29 100.0 32 ............................. CAGCGGCAGGGTGGCAGCTGCAATCTGTTACG 377495 29 100.0 32 ............................. TCAAGAATTGCCCCTACGCTTTGTGCAATGCG 377434 29 100.0 32 ............................. TGCATTAACTGCACTGAACAACATGATGTTGA 377373 29 100.0 32 ............................. ACAATGTAGATAGATTAATACAAACCGTTAAA 377312 29 100.0 32 ............................. TACTAATAAAGCTGATGCAATTGCATTTTCGC 377251 29 100.0 33 ............................. CATGATGTGAATCACTCACTCAATATTGAGTGC 377189 29 100.0 32 ............................. GGCCGTAGTAAATGCGAGAGTAAACCTGCCCT 377128 29 100.0 33 ............................. TGTTACCCGTTGCCTCTGTTGTAGTGATTGTAG 377066 29 100.0 33 ............................. TAGAACTGGGAGTAGTCTCTTTAACCTCTTCCC 377004 29 100.0 32 ............................. ACAATTACGAAATACTAGAAACGCGCGTAAAA 376943 29 100.0 32 ............................. GTCTATCGTATTATTGGCATAGAAGCAGGTGA 376882 29 100.0 32 ............................. TGCATTGAACAATCAGGGTTTAAACGTCACCG 376821 29 100.0 32 ............................. CACCTATGGTCTTACACAACCCCTTTTGTCAT 376760 29 100.0 32 ............................. TCAAAGCTGAGCACTACGCATCGAGACAGGGC 376699 29 100.0 32 ............................. TAGATACACGATTTTGTTCTGAACTGTTGAGC 376638 29 100.0 32 ............................. AATACCTACTTTGGACATGGTGTTGGAGACAG 376577 29 100.0 32 ............................. CTTTGAAAACAACCCAAACTTAATTTAAATCA 376516 29 100.0 32 ............................. TGAAATCGGGTAGGGGTGAATACGATTCAAAA 376455 29 100.0 32 ............................. TAGATGATCTGGTTTTGTGTTTCTTTGATGTT 376394 29 100.0 32 ............................. CCAGCAAAAACAGAATCAGGGTCAAGAAGCGA 376333 29 96.6 32 .....................T....... TATTTGGAGTATCTAAAATCGCCCTTATCTAA 376272 29 100.0 32 ............................. GCTTTAGGTGTCACCGTGGAAGGTGATGTCAC 376211 29 100.0 32 ............................. CGGTCTGGAATCGGCCATTCTAACACTCGTGA 376150 29 100.0 32 ............................. TGTGTTGCCATTTTTGATTTGTATGGTGATTA 376089 29 100.0 32 ............................. TTTGGGATGTTTGCAAACACCATTTCGGTGAC 376028 29 100.0 32 ............................. GGTAATACCGCACTGTTTGTGCTTGCAGGGTC 375967 29 100.0 33 ............................. CCGTCAAAATTAATCCACGATTGACCATGCCAC 375905 29 100.0 32 ............................. GAACCACGTTAGTACCTGTCGATCAATTTGAT 375844 29 96.6 32 ......A...................... CATGGGTTCACAGTTCTTAGTGATTTTAAAAA 375783 29 93.1 32 ............TG............... AACTGTAACCACTGAGGAGGAGTTTTTATTCC 375722 29 93.1 32 ............TG............... GCCCCTTTCCAATGGCTAGTTTTACCCAGCAA 375661 29 93.1 32 ............TG............... TTAGTAAAACAGTGATCTTATCTGTATAAGCG 375600 29 93.1 0 .............G.G............. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.3 32 GTGTTCCCCGTACACACGGGGCTAAACCG # Left flank : CGTATGAGGATGCACAGCCTCCGGCAATTCCTGAACCAGAATCTATTGGTGATGATGGCCATCGCAGCGGTGGTCCGTTATGAGTATGTGTGTTGTTGTAACAGAAGCAGTACCGCCTAGATTGAGAGGAAGGCTTGCTGTATGGCTGCTTGAAATCAGAGCGGGCGTATATGTGGGCGATATTAGCCGCCGTGTTAGAGAAATGGTGTGGTTTCAAGTCGGCGAGTTAGCCGAAAATGGTAATGTAGTGATGGCATGGGCAACTAATACTGAGTCCGGTTTTGACTTTGTCACTTACGGAAAAAACGCCCGAATGCCAATTGATTTTGACGGATTGAGGTTAGTGAAATATACACCGCAAGAAAGCTCTTCTATTGATGATGAATAATTGTTTTGCTCTTTAAAAATATGGCTATTTAAACCCTCGTATTGTACCTAAAATTTTTGGTAGATTTTTATTCGTTAAATTTACTTATACAAATCAATGGTATAAATTTAGA # Right flank : AGCAAACACCTAATCGCGCAGTGGAGCTATCTATATTCCCCGTATGCACGGGACTACTTAATGAGACGAATTTATGGCACTCGTTAAAATGGGGTGAGTAAGTTTTATACAAAAAATGGGTCTAACAAGCTGATATCTTTTCTAAGGGCTGAGGTGCGGGATTTAGGCACTTATGGAACTGTTTCGTAAGTCAATTTTGTTATCTACGCAATGAATGAGCCTAACTTAAGGAATGATTTTTTATTAGGTTTATGGTTGATTTGTTATTCTTTGTTGGTATTTTGTAATTAATTTATAAGGAAAATAATTGGCCAACCTAGCATGATAAACAATAAAAAATTACTCCTTTCAGTACTTGGTACGCTTTTTCTCGGTGCTTGCAGTTTAAATCAAAATCCCGAAGGCTCATATAGTGGAGATGACAGAGTCAATATGGCGGGAGCTGCACAACTATTATCACAACATAGTTTTGTGACGATTGATTTAGCGCCCATCATTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 389570-388870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJED010000004.1 Pseudoalteromonas luteoviolacea strain MMG019 assembly_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 389569 29 96.6 32 ............G................ ATTTAACTTCTGGGAAATGCGAGAAGCTTGGT 389508 29 96.6 32 ............G................ TTTTATTCACACTATTAGTGTAATTATTTGCC 389447 29 96.6 32 ............G................ CCATTTCAAAAAACAAAGTTAGAAATGGTGAG 389386 29 100.0 32 ............................. CCCATAACAAGCTAAGAAATCATAAATAACCA 389325 29 100.0 32 ............................. CAGGGGTTGTAGTCGACTATACTATAATGCTG 389264 29 100.0 32 ............................. ACCGCCTAATGGCAATTATTGCTGGTTGTAAA 389203 29 100.0 32 ............................. AGTTCAAATCCCCTGAAGAGCTGTCTAAATTC 389142 29 100.0 32 ............................. AGTAACATCACTCATTGCTTGGATCAGCTAGC 389081 29 96.6 32 ............G................ GCCGTTGGCCAACAAAGAACCATGATTTTATA 389020 29 100.0 32 ............................. CCGGACGTTAGATACTACAAAGCTGGTGTAGG 388959 29 96.6 32 ............C................ TGTGTCGCTTGATTCCTGCTCGCTATTTTCTA 388898 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGTAAGCACGGGGCTAAACCG # Left flank : | # Right flank : AGATATAACTAGAACTTCAAGAATTTGTATCTTTTTGAATAATAATAACAATATAAATCGCGTCAGTCTGAGCTTGTCTAAAAAACCATTATGTTGATCAAAAGCGAGAACACTTGAGGCTAGTCTTTAACAGAATGTATGAGCAATTGAACACAAGCACAATATGAGCAGTGCTTAAATTTTGTCGCAGGTCAATGACTTCCCTGTCTTTTTTTGATACATTTTATTTACTTTTATATTACCAAAAGTGATTTATGCAGGCTAAGGAACAGCAATATTTTCGATACATTGAGGCGGTGTTATTCTGGCAAGGAGAAATCCAAACAGGCACTTTTCAAGATAAGTTCAAACTATCAAGACCCAGCGCAAGGCGCTACCTAACAGACTTTATCACACGGTATCACATTGACGCACATTACAACGAGTCTGAAAAAGCTTATGTATTGGCAACCCCCTTTACACCGAATTATATTTCCCAAGACTTTACCGAGTATGCCAAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTAGGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //