Array 1 1-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHL01000669.1 Streptomyces sp. SID724 SID724.c837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TATCACTCGAACGCGTGAGCGAATGAGGAAAG 62 29 96.6 32 .....................A....... CAATCGGGCTGGCCGACGACATCGACCCCGAT 123 29 100.0 32 ............................. CCGTAGTCCGCGAGCATCGCCGTGAGCTGCGC 184 29 100.0 32 ............................. AACCCCATGTCGACCGACATTTTCGGGCAGGG 245 29 100.0 32 ............................. CCGGCGAGACCGGACTGCACGCGCTGCTTCGC 306 29 96.6 32 ............................T CCGTCCGTCGCCGTGGCGTCCTGGAGGGACTG 367 29 100.0 32 ............................. CCGAGGACACCAGGGCCAGCGGTGTCGGGCTG 428 29 100.0 32 ............................. CCGATCGCGGCCCGCGCGCGAGCGATAACGGC 489 27 93.1 0 ...........................-- | Deletion [516] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : | # Right flank : C # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHL01000799.1 Streptomyces sp. SID724 SID724.c989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ACCCGTTCGGGGATCCAGATCATGAAGGCCAA 62 29 100.0 32 ............................. AAATGCCCGTCCTTCTGGACGTCCCACCCGGG 123 29 100.0 32 ............................. CCGCCGAGGTGGCTGCGGCGTTCCGGTCCGAC 184 29 93.1 32 .....T......................A CCCCACCCACCACACCCATCCCCGGACAACTC 245 29 100.0 32 ............................. TTACGGAGGTCGAGCAGGTCGCCGAGTTCGCG 306 29 100.0 32 ............................. GTGTGGGTGATCCGCACCGTCGACGAGCAGAA 367 29 100.0 32 ............................. TCCCCGAGGTTGGTGAACACCTGCTGGATACG 428 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 33 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : | # Right flank : AC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-273 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHL01000995.1 Streptomyces sp. SID724 SID724.c1229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GACGAAGACGGCTGGTACCTCACAGATCGGAA 62 29 93.1 32 ..............G..........A... TGCCGTCCGCCCGCCGCCAAGCACGGGTCGAG 123 29 96.6 32 .........................A... GTACTGGACGCCGACGACGAGCTGACGGCCGG 184 29 96.6 32 ............G................ CCCTCAGGGCCCGACGACAAGCCCGAGCAGGA 245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3339-3072 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHL01000941.1 Streptomyces sp. SID724 SID724.c1164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================ ================== 3338 27 92.6 32 ...G...................C... CCCAGGATCGCTGCCCCGGCGTCGCCGTAGTA CA [3323] 3277 27 88.9 32 ....A..C...............C... AGTGTGAAGGTTTTGACGGACCGGCTTACCCG CA [3262] 3216 27 96.3 32 .......................C... CCACCCCAGATTTTGCGGGGACCCTTCTCCAA 3157 27 100.0 32 ........................... CACTGGGCCGGGTCCTGGTCTGCCTTGCTCCG 3098 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================ ================== 5 27 95.6 32 GGGACCAACCCCGCGCGCGGGGATCAC # Left flank : CCGAGCACAGCGACGACTTGACCGGAGTGTCATGCATCGCGGCCGGGTCAGACAGCCTCTTCGCGGAGGAGGTCTCCGCCATCGGTGGCCGCCTCATCGCGGTCATCCCTTCCGAGGACTACCGCGCCGCGAAGGTGAAGCCCGAGCACCAGGCAGTCTTCGACCACCTGGTCGAGGCCGCCACAGAGGTGGTGACGCTGCCGCACGCCACAGCGAACCGATCCGCGTACGAGGCAGCCAATGCCGAGCTGCTGCGCCGAGCCGACCGCCTCGTCGCGGTCTGGGACGGTACGCGCCCGTCGGGCAAGGGCGGCGGCACCGCCGACACCGTCGGGCAGGCCCGGCAAGCCGGTCTTCCCGTAGATGTGGTCTGGCCGGTGGGAGCCGCTCGGCGAGGGTGACTGGTACGCAAGAACTTCCCCTGCCCGGTCTCGACGGCCGGGCAGGGGGAGTTGCGGACCATGGGTACTGCCTGCGCGGCCCCTCCGCCCGGTGACGAG # Right flank : AGTTCCTGACCTGCGACTTTAACGGCCACCAGCCCGAAAATCGGCAACTTCGGTTCACGTGATGTTAGCCGGTGGATCCTACGCCACGGCCCCGGAACGACGAGGATCCCCCGCCGCCGGCCGAAGCCGGGGCGGGGCGTTTCATCGGGCGTCGCGGGCAGCGACCAACTCGGGATCCATCGGAACGAGCGGCGTGCCGGTCACGCGGACCTGTCCTTCACGCAGCGGATCCATGTGCACCCTGACCCGCAGTCACTCCGGGCCGGAAGCGAGAAGTTGAACGAACTGCTCGGATGATCGGGCGATCAAGATCAAAAGGGCGTGTGAGAAAAAGTGAGACGAAACGAGGAAGGTCCTGATCCTCCGGGGGAGGATCAGGACCTTGACCTGGTGTTTCTTGTGCACTCGGCAGGATTCGAACCTGCAACCTTCTGATCCGTAGCTCTAGCCAGATTGGTCAGCTACGGCCATACCGGTTGCTACGAAGCCCCGGAAAGGTA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGACCAACCCCGCGCGCGGGGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 334-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHL01000106.1 Streptomyces sp. SID724 SID724.c136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 333 29 100.0 32 ............................. CGGAGATCCTGGTCCGCGGTCGGTACGGCCGC 272 29 100.0 32 ............................. GACGATTCCGGCTTGGTAGTCCTTCGCGTTGA 211 29 96.6 32 ............................T CCGCGGCGCTCGTACGGCATCCACTCGGCCCG 150 29 100.0 29 ............................. GGGGGCAGCCTGTTCCCGTACGCCGACGC 92 29 86.2 33 ..C..G...C..............A.... CCGAGGACGGACGCGCGGGACTTGGTGCGGCCG T [85] 29 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : C # Right flank : C # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67-278 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHL01001199.1 Streptomyces sp. SID724 SID724.c1490, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67 29 96.6 32 .C........................... GTGCCCGCGTAGACGACGCGGCCGTCCTCGGT 128 29 100.0 32 ............................. CCGGTCATCCGGATCGTGAAGCGCTACAACGA 189 29 96.6 32 ..............G.............. TAGACGATCTCGCGGAGTCCCATCATCCCGGG 250 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CACGGCGGAGGACGGGCGCAGGGTGTGGGCGGTCCTCGACCTATAGGTGGGGTACCTCAGCGACTTG # Right flank : | # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63282-62766 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHL01001269.1 Streptomyces sp. SID724 SID724.c1575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63281 28 96.6 32 -............................ GTTGCTCGGGGCCTCGTGCTCGACCGCCACCG 63221 29 100.0 32 ............................. CCGTTGGCCCCCCTCCGGGGAGAAAGGAGGGG 63160 29 100.0 32 ............................. GCGACAGCCGAGGACTTGGTCCGCGACATCTG 63099 29 100.0 32 ............................. GACCACCATGCGCATCACTCTCATGACCCACG 63038 29 100.0 32 ............................. CGACAGCAGCAGCCCGAGCAACACGACGGGTC 62977 29 100.0 32 ............................. TCGCATTCCGCGGTGACCCAGCTCGACCGCCA 62916 29 100.0 32 ............................. GCGTAGGACTTCCAGTCGCTGCCGAATCCCCA 62855 29 100.0 32 ............................. CGGTTCTCCAGCTTGTTCGAGGTGGGGCCGTG 62794 29 96.6 0 ................G............ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : | # Right flank : GTGTCGGCCCCGAGGCCCTGAAGCCGCTCCTCGACTACTACGGCACACCGATGACCTTCACACGCTGGTATCTCACGTGGCTGGAGAAGGCTGAACATCAGCTGGCGTCGGGCCCAGCGGCAGACTGAGCTGGCAGATCAGTGGAGGTCGTGCCGAGCTTCCTGGCCCAGGTGTCAGTGCGGGGCCTTGCTAGGTCCTCCTCGCCCCGTGGCGTGAGCGGGGCAGGCACCACCCGGGCCAGCGGCGTGATCGAGGCGGTTCCAGGCCTTCTGGCCCGGGGGGATCGGGGAGAGCCAGGTCCGGCCCGGGTGGCGGAAACGCAGGTGCGACAAGGCCCGGCGGGCTATGGCCCGTTCGGGGAGTCGGGTGACCATGCTTGTCGTCGTCAACTGGCCGACCGGGCACCCGGTGCACAACAGATAGGAGATTTCACCGACGACCCGGCGATGGAGCACCAGGAGCAACTTGTGCTCCTCGGCAGCATCCCGAGGGGGACTGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //