Array 1 361856-363470 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKTY01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 14028 Ga0213566_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361856 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361917 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361978 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 362039 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362100 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 362161 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362222 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362283 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362344 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362405 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362466 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362527 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362588 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362649 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362710 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362771 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362832 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362893 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362955 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 363016 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 363077 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363138 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363199 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363260 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363321 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363382 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363443 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379603-381079 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKTY01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 14028 Ga0213566_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379603 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379664 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379726 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379787 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 379848 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 379909 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 379970 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380031 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380092 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380153 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380214 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380275 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380336 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380398 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380501 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380562 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380623 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380684 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380745 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 380806 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 380867 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 380928 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 380989 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381050 29 96.6 0 A............................ | A [381076] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //