Array 1 8254-6884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPC010000071.1 Nocardia farcinica strain BJ06-0055 NODE_132_length_24893_cov_8.459097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8253 28 100.0 33 ............................ CGGCAAGTGGCGGAGATCACAGGAATCGCCCGG 8192 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGAAGAG 8131 28 100.0 33 ............................ CGCTGTGTGGTCGCAGTCGGCGGTGAGCGGCGG 8070 28 100.0 33 ............................ CTGGGCCAAACACCTCGGCGTCCCGCTCCGGAA 8009 28 100.0 33 ............................ CGCGGCGCTGGCGCAGCAGGCGTCGCGGGTGGA 7948 28 100.0 33 ............................ CAGGTCGGTGTCGAACGCCTGCGTTTGCACACC 7887 28 100.0 33 ............................ CCCGCGCTCGTGCCGGTATCCTGACGCTGTGAG 7826 28 100.0 33 ............................ CCGCTTGGTCAGTTCGTCATCGGCTGCGGACAT 7765 28 100.0 33 ............................ CCCTTGCGCCCGGGCTCGTTCGGTGTTGGTGAG 7704 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 7643 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 7582 28 100.0 33 ............................ CCGGTGCGCTTGTACGTCTCCTCGTACGGAATG 7521 28 100.0 33 ............................ CTCGAATGCGGTGGCGTCGTCGGCGCCGGCGAT 7460 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 7399 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 7338 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 7277 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 7216 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 7155 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 7094 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 7033 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 6972 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 6911 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGGTCCTCGACCCGCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACATGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1576-2947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPC010000070.1 Nocardia farcinica strain BJ06-0055 NODE_127_length_25363_cov_8.859486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1576 29 100.0 32 ............................. TCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 1637 29 100.0 32 ............................. ATCTCCGATGACGGCAACCAGCTTGAGGTGGT 1698 29 100.0 32 ............................. CTTGCCCTGATACGTCCGTAACCCCGCGTACG 1759 29 100.0 32 ............................. TTGTTCATCGCAATCACGGGATCGCCAGCCTT 1820 29 100.0 32 ............................. TTGGAGACCGCCATCGAGAACGCTTGCAACGC 1881 29 100.0 32 ............................. TCGGGATCGATGCAGGGATTGGTCACGGTGTG 1942 29 100.0 32 ............................. GTGAGAGAGGCCCTGACCGGGTTGTTCCTGGT 2003 29 100.0 32 ............................. CGACCTGAATCGACAACCCGGCATGATCAAGC 2064 29 100.0 32 ............................. ACCCCGAGGAGCGCTGATGCCCGACATCGCCA 2125 29 100.0 32 ............................. TCCGGACATCACATGCTCCAGTTCTTGTAGGC 2186 29 100.0 32 ............................. TGTGGGATGGAATGGAGTAAGAATCAGATGAA 2247 29 100.0 32 ............................. TCACCGCGGTGAACAGCAAGCTCGCCGCGGTG 2308 29 100.0 32 ............................. ATTTCGCCCCACACGGTGCCCTCACCTCTCAC 2369 29 100.0 33 ............................. TTGACGGGGCAGACCACGCGGGCCACGACCGGG 2431 29 100.0 32 ............................. GGCACCGAGGGCTGGTCCCCGCGCCAGTACAC 2492 29 100.0 32 ............................. GTCACGTCCCCGGAGAGGCTGAGCGGCAGGAG 2553 29 100.0 32 ............................. GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 2614 29 100.0 32 ............................. TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 2675 29 96.6 32 ................C............ TGATCCGGGCGATCCTCGACGCCCTCACCGGC 2736 29 96.6 32 ................C............ TGAGCCGCGATACCTATCGAGCTACGTAGCCA 2797 29 93.1 32 ................C...A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 2858 29 96.6 32 ................C............ CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 2919 29 86.2 0 C...............C...A..T..... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGCTCCCCGCGCACGTGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGAGAAGCTGATCGTCGCCGACCTCTTCACGCTGTGCTCCCCGCGCATGCTGCGTCGCGGCCGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13967-14498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPC010000070.1 Nocardia farcinica strain BJ06-0055 NODE_127_length_25363_cov_8.859486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 13967 29 96.6 32 .......T..................... AGGTGTCAACCGGGGCACCACACACCACAAGG 14028 29 100.0 32 ............................. CGGCCCAATCGGGGCACCCAAGCTGATGTACC 14089 29 100.0 32 ............................. GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 14150 29 93.1 32 ............C...............T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 14211 29 96.6 32 ............C................ GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 14272 29 93.1 32 ............CG............... GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 14333 29 93.1 32 ............CC............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 14394 29 89.7 46 ..........T.C............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC C,T [14399,14422] 14471 28 72.4 0 A.......G..AC.T..-C...C...... | ========== ====== ====== ====== ============================= ============================================== ================== 9 29 92.7 34 GTGCTCCCCGCGGACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : CGGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23683-25236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPC010000070.1 Nocardia farcinica strain BJ06-0055 NODE_127_length_25363_cov_8.859486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 23683 28 100.0 33 ............................ CGAGACGCCCGGTCTGATTTGACCCATTCCACT 23744 28 100.0 33 ............................ CGAGTTCGCCTACGGCGTGGCCCCCGACGACCA 23805 28 100.0 33 ............................ CGCGAGCATCGTCGACGAGGAGCGGCTACGCGG 23866 28 100.0 33 ............................ CTTCCGGGAAGGGTGCAGCTTCGCCAGGATCCA 23927 28 100.0 33 ............................ CGCGGTGGCCGAGATGGTCCGGGAGCTTCGAGC 23988 28 100.0 33 ............................ CTGGAACGGGCTCGGCGGCGGCCTGGTCGGCAT 24049 28 100.0 33 ............................ CTCCCCTCGATGCGCCGCTTGGCAGACGAGTAC 24110 28 100.0 33 ............................ CGACATCAGCATCGGCATCATGCGGGGCGGCGG 24171 28 100.0 33 ............................ CACCTCGACCAAGCTCGAGGTGCTCAAGCGGCA 24232 28 100.0 33 ............................ CCGGGATTCCAGGACTGGAAGGACGCCGACCTG 24293 28 100.0 33 ............................ CAGAACGCCGCCTGACCGCGAACCCCACTCAAC 24354 28 100.0 34 ............................ CAGGGGCGTCACCACGTACAGGACGGCGCTGAGC 24416 28 100.0 33 ............................ CCGTGGGGCCTCATGCACCTCGACCGGCCGGAA 24477 28 100.0 33 ............................ CTGCACCGCCGAGACGTCGCCGAGCGCAAACAC 24538 28 100.0 33 ............................ CAAGCTGGTGTCGATCTCGGCGTCGACGATGAC 24599 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 24660 28 100.0 33 ............................ TGGCTCGCGTCGACGTACGGCCAGGCCACCGCA 24721 28 100.0 33 ............................ CCCGAGACCGCAGGCGCAGGTGGTCGACCGGGA 24782 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 24843 28 100.0 33 ............................ CGTCAAGATCTGGGAATACGCCCGGGTCTTCGT 24904 28 100.0 33 ............................ CGGCCGCACCTTCGACCCCCAGCCGGACGCTTT 24965 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 25026 28 100.0 33 ............................ CCACACCATCAGATCCGCGAGCGCGGTGGCCGT 25087 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 25148 28 100.0 33 ............................ CGGTCAGGCTCACCGCGCCGACACCGACGGCGA 25209 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 26 28 100.0 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGTTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CGATTGTCAGCGGCCATGACATCCTCCCCATGGGCGGCCATTTAAGGCCCCGCTGGTGGCCACCGGATTCCCCGTGGATGGCCAGATATCTCCCCAGGTGATTTGTCCTGGTTGCCGCGCGGGCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10206-10842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPC010000013.1 Nocardia farcinica strain BJ06-0055 NODE_19_length_126363_cov_9.118278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10206 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 10267 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 10328 29 100.0 32 ............................. CAGCTCAGGAAGCCGTCGAGCAGCGTGCCGGT 10389 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 10450 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 10511 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 10572 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 10633 29 100.0 32 ............................. CCTGCGGCTGCGGTCAGGTGCGACCCAGCGTG 10694 29 96.6 32 .................A........... GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 10755 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 10815 28 79.3 0 ....CT.......-G.GA........... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGACGGACCAGGCACGTGGGGCGTAGTCGGTCTCTCACGCGCCCCTTGGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACTATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTGCAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACGTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGCGCTCTTCGAGGCGGGTCGGCATCAGGTTCATCCTTTTCGCCCGGAAGGAGCCGCCGACTGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAGTTCCTCTGGGGTGACGCCGAGTTCTGTGAGTATCGCGCGCAGTTCTGCGAAGGCTTGGGGGAGGTCGGGTTCTTCGGCGTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18036-18369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPC010000013.1 Nocardia farcinica strain BJ06-0055 NODE_19_length_126363_cov_9.118278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18036 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 18097 29 100.0 32 ............................. CCGTACCACCACACCGGGACGTCGCCGCGATT 18158 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 18219 29 100.0 32 ............................. TCGCCTCTGGAGCCTGGCACGAAACGCTCGGC 18280 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 18341 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGGCAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCCGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGGCGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTTCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 161-1085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLPC010000042.1 Nocardia farcinica strain BJ06-0055 NODE_71_length_49273_cov_8.490660, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 161 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 222 28 100.0 33 ............................ CGAGGCCCTCGAGGCAGCCATCAACATGGCGGG 283 28 100.0 33 ............................ CGGCGTGACCGTCGCCAGCGTCACCGGCGCGTC 344 28 100.0 33 ............................ CTGGTCGTGAGCGCCTTCTTGATAGCGCTGGGC 405 28 96.4 33 .................T.......... CCCGTTCCTCACCGACGCAGCGCACGAGGAAAT 466 28 100.0 32 ............................ CTGGACGGCGGCCGGGTGTCGAGCAGTGCGGG 526 28 100.0 33 ............................ CGGCGCCACCCCGCCGATGCCATCCCCGACAAA 587 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 649 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 710 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 770 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 831 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 1057 28 71.4 0 ...G..TG.....CG.TC..A....... | G [1084] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 13 28 97.2 47 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGGGGGTGAAGCCACTGCGCTGACCTTGATGGGGAAATAACTGGCCACCGTTGGGGAAAACCAACTGGCCACCAGCGGGGACGATTACCGGCCGCCCGCGGGGAGAACCTACTGGCCATTGACACCCGATGTCGACGCCGTGCTCGCCGCGATCGGTCAGG # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //