Array 1 951731-951366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024422.1 Paracoccus yeei strain TT13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 951730 31 77.4 36 .CAATT..A.A.................... ATGAAGAAAACAAACGGCATCCATTTCGTTTGCTGG T [951718] 951662 31 100.0 37 ............................... GGTTAAACGCTCGTTCTTCGCTCGTTTCGATTCCAAG 951594 31 100.0 37 ............................... GAAGCGAAGGAAGATCCGCGCGAGACGGAAGACCGCG 951526 31 100.0 34 ............................... ACGCGCTGTCTGACGCGATCAAGGTGCGCGGTTT 951461 31 100.0 34 ............................... GATGACGAAATCAAGCTGCCCGTTCTGGCGCAGA 951396 31 77.4 0 .............A.A.A.A...C....GG. | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 92.5 36 GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Left flank : GGGACCGCACCGATGCCAGCATGGCACGGCGGCTGGACGGTTTCCGCGACCCCGTCCCGCCCGCGATCACCGCGGCAGCGCTGCCCGACCTTGGCCCCGTCCTGCGCGAGCTGGTCGCGTTCCGGGACGGCAAGACGCCGGGATTTGACATTTCGGTGGCCGCGCGGATGGTGTTTTCCTGCCTGGTCGATGCCGATTTCCGTGACACCGAGGCGTTCTACGCCCGGCTGGACGGCACCCGCCCGGACCGCGAATGGCCCGCCCTGGCTGAGTTGCTGCCCGCCTGGCGCGCGGCCTTTGACGCGCATATGGCGACGTTCTCGACAGAGGGCGAGGTCAACGGGCTGCGCGCCCGGGTGCTGACGCACGTCCGCCAAGGTGCCGCACTGGAGCCGGGCCTGTTCACCCTGACCGTGCCGACCGGAGGGGGCAAGACCCTCGCCTCGCTGGGCTTCGCGCTGGACCATGCGGCGCGGCATGGAAAACGCCGGATAATCTTT # Right flank : GGCACTACAGCGCAACCCAGAGCCTGACGCTCTGGTCGCCCCGTTCCCATCCTCCCCTCGAAAAGGCCCGTCCTCCACAAAGTCCCTGCCTCCCTCAGGCACACCTGCGCCACCCCCGCCCCGCACCTTCTGCACATCGCCGTGTTCACGGGGAACGGAGGCGGGCGTCGTTCGTTGCCTTGTCCTGTGCCAAGGAAGGTTGCAATGCCCGACGAGCCTGACGACATCATCCCCGTGATCCAGGAACAGGTCGGCGTCAGCGTCGAGCGGCGCCTGGCCGGGCGGGTCCGGGTCAGCGTCCGGACCCAGACCGACGAAAGCCTGGTTCCGGTGGATCTGACCCAGGTGGATGTCGCGGTCGAGCGTGTGCCTGTCAACCGCGCAATCGATACAGCCCCCGAGGTCGTCACCCGCGGCGATGTGACCATCATCCCCGTGGTCGAAGAACGGCTTGTCCTGACCCGGCAGCTTTATCTTCGCGAAGAAATCCACATCCGGCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2493898-2494230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024422.1 Paracoccus yeei strain TT13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2493898 29 100.0 32 ............................. TCGGGCGGCTCTCTGACGCAGACGCTGCAACA 2493959 29 96.6 32 .........................C... CCTCTCGACCTCGGCCCGCAGGTCGGCCTCTG 2494020 29 100.0 31 ............................. TGGGTGCCGCATGTGGAGCAGCGCGGTGACA 2494080 29 96.6 32 ................G............ GTATGGGATGGAGCAAACTGGGTGACAGCGGA 2494141 29 100.0 32 ............................. GCAGAAACCGCCGTCGCCCTGCGGGAGCCCAC 2494202 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 CTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : ACCAGCCCGATCGCGCGCATGCCAGCGAGACCTGGCGCAAGGTGGCCGAGCAGCTGCGCCCCCGCTGGCCGAAACTGGCCGACCTCATGGATCGAGCCATGAGAACGCCACTGGTCCGAGTGACCATGGCGAGGAGCGAACACGATGTGCTCGCCTACATGTCCTTCCCCCGTCAGCACCGCACCAAGCTTCACAGCACCAACCCGATCGAGCGCTTGAGCAAGGAGGTGAAACGCCGCGCAGATGTCGTTGGCATCTTCCCAAATGAGGCATCCATCATGCGGCTGATCGGCGCCGTGCTCTTCGAGCAGAACGACGAATGGCAGACATCCAGCCGATACATGATGGTCGAGGCCTTCGCCCAGATCGACAAGGAGGAGGTCGACCCCATCCTCAGCATTACCACAAAGGCGGCCTGATCATGACCTCAGGCCATCACGGAATTTACACCATCTTGACGGACGTTACCCCGGTTATCGCTTCGGTCTGGCCGATTTCCC # Right flank : GGCCACCAAAAAGCGTCTCGCCGATCAGGACTATCCGGCCGCTCTAGATCGTAAGCTTGGGCCGATAGTGGTGCTCCATACGAATGGCCGCTAATGCAACGTTTCTGCAGTCACTATGCCGCAACGCGGCTGACAGCTTTGCGCGCAACTTGTCGCTCTCGACCTACATAGCGAACGGCAGCTTTCTCCAGTTTTTGCGGATGCGATGCCGCACGCTCACAGTCCGCTCGCCGCCCGATGCTGCTGGATTCGGTGTTGGGGCAGTTTTCGTGACTACCGCCCCTTTGGCTGCTGTGGCCCGGCTATGGCTGAGATAGATGCTTGATGAGCGCGGGCAGTTCAGTCTGCACTGTGGTCCAGACGACATGCAGGTCGATGTCGAAGTACCCATGGGCGATGCGGTTACGCATCCCGCGGATCCCGCGCCATGGGATCGCAGGCTTTGCATTCGCAAAGTCGGGGTGATCCGATAAGATCCGGCTCGCGGCCTCTCCAACGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //