Array 1 735-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000105.1 Vibrio cholerae strain M1516 contig00105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 734 28 100.0 32 ............................ GTGCTGGCTTTATCCACATTTTTGAGCCGAGC 674 28 100.0 32 ............................ GTGCTGGCCGAGTTGGTGCGTGACGAGCGTGT 614 28 100.0 32 ............................ GCCACTATGAACTTTAGCTTTTTCTTCGTTAG 554 28 100.0 32 ............................ AAAGAATTCAAGGGGCGCGGATAGTGAACCAA 494 28 100.0 32 ............................ TACACGTTACAACGACCTTTTCGTGCGATCCG 434 28 100.0 33 ............................ TCTGATACCAATGAAGTGTACGCACCTAGTCGA 373 28 100.0 32 ............................ TCAGTTGAAGGAAGGCGCGTTCTTCTTCTCAG 313 28 100.0 32 ............................ TTCGCGCTGCCATTCGGGGAGGCTCTTGAGTC 253 28 100.0 32 ............................ AGATATTGGAGATTCAACCGACCGATACAGAA 193 28 100.0 32 ............................ GTCAGTAGCGTGCTGTTGGCCTTACCACGCGT 133 28 100.0 32 ............................ TGTAAAAGCTCTACGTCATTGAATGTTGCTGT 73 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGGCAGCTTAGAAATGGTCACGTCACTAACTGCTTACTATACTT # Right flank : AAGGGTGGTCGTTTCATCGCTGTAAAGCACGACGTTCACTGCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 477-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000134.1 Vibrio cholerae strain M1516 contig00134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 476 28 100.0 33 ............................ GCGCTATCTCCATCTTGGTAATTTAATGTTAGT 415 28 100.0 32 ............................ TGCATTACCCTCAGCACCAAGGTTAGGGTTGT 355 28 100.0 32 ............................ AATTGGAACAAGCCGCAGCGCCAAGCACCTGC 295 28 100.0 32 ............................ TTACAACTAACTTTTTAAGCTTCTTTGCTGCT 235 28 100.0 32 ............................ GACCAGTTTTCACAACTGCTTGATTTAATCCT 175 28 100.0 32 ............................ CCCAAAGCAACACGCTCTTGATAGGTGGTATT 115 28 100.0 32 ............................ TGATAGCGCTTTTCGTCTTGCTCGACGAGTTC 55 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 ATTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGCCTCAACCAGCACACCAGTTGTGGC # Right flank : AATAATCGCCACCAGAGGAACTACCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20-468 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000135.1 Vibrio cholerae strain M1516 contig00135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 ............................ TAAATTCTTCGCCTTTGAAGATGCATTAATGC 80 28 100.0 33 ............................ GACACGGCAGGCGTCACAACGGCAGCACGAACC 141 28 100.0 32 ............................ GAAGTAAACGTCCACCATGTTTCCAGACAATT 201 28 100.0 32 ............................ TGCTTCTTTGGTTTCAGTGGCTTTGTGTACAA 261 28 100.0 32 ............................ TTGCTAGCAATCCAACGCCACAAAGCATTGAA 321 28 100.0 32 ............................ TGTTTGTGAAGTCTGAGACGCCACAAACGCCG 381 28 100.0 32 ............................ TTCTTTGACCGCTTCGGATTCTTCGCCGTCAG 441 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCCAAGCTCCTCAAACCTCG # Right flank : GTTTGCATCTTGGGACGGACCGAAGTAAACGTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21262-21557 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000029.1 Vibrio cholerae strain M1516 contig00029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 21262 32 100.0 35 ................................ AGGCTCAGTTAGAGCCGGTATGGTGAAAGATATGA 21329 32 100.0 33 ................................ AATAAAGAGCGCTCACTTAAGCAAGATAACTGG 21394 32 100.0 35 ................................ TGGAAGGTGTCGATCTGTCCGATGAAGTTGAAGTG 21461 32 100.0 33 ................................ AATTACATCACCGGAATCAAGACGCATTCGTAT 21526 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAAACGCCTCAGACAATTAGCAAAGGTATGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGACATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATATTATAGTCGCTAGGCTTGAGTTCTCAGTAAAATACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTGTACGTGCCTCTAAGAAGAGGCA # Right flank : TGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 14887-15154 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000032.1 Vibrio cholerae strain M1516 contig00032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14887 28 100.0 32 ............................ TTTTGGCGCGCCCCTGATAACATTGCCATTAA 14947 28 100.0 32 ............................ ACTCAAGCTCAAAGCCTTGCCACCCACGCTCA 15007 28 100.0 32 ............................ ATCACTGGCACACAGGCTCAACGTGACAGCAG 15067 28 100.0 32 ............................ TTTCAGGCTATGGGTCTTTTAAAATCGATAAC 15127 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACCGTGCCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACGGGTGATTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTGTTTTTATCGGTTTATTCTATT # Right flank : AACCAAACGGCCACCGATAAGCTCAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8095-7707 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000039.1 Vibrio cholerae strain M1516 contig00039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8094 28 96.4 32 ...........C................ TTTAAAGCGTTGTGCAATCCTTATGCACTTCT 8034 28 96.4 32 ...........C................ TGAGCCGCACAAGCCGAGTAAACTCGGCGCGG 7974 28 100.0 32 ............................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 7914 28 92.9 32 ........T..C................ GTGGCGAGAGTAACCGGAGTTCATTACCTCAA 7854 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 7794 28 100.0 32 ............................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 7734 28 89.3 0 ..........A..............TT. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1667-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000081.1 Vibrio cholerae strain M1516 contig00081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1666 32 100.0 34 ................................ CGGTGATTTCACCAGAATCACTGACTGTGAATGG 1600 32 100.0 34 ................................ AACGAAGTCATGATGAACTACATCGACCAAAAAC 1534 32 100.0 33 ................................ TGGCAGCAGTTCAACTTTGCTTTTGCGGTTACT 1469 32 100.0 33 ................................ CCTAGCGCCGCTATACGCGCAAAAACTGAATCT 1404 32 100.0 33 ................................ TGGAAAAAATGAACAAATCCACTTAGCTAAACG 1339 32 100.0 34 ................................ ATTTTGGTTGTGAATTTTGCGTCAAGCTCTCTAT 1273 32 100.0 34 ................................ AAGAAAGCGATCAAGCAACTCTCGGATGAATTGA 1207 32 100.0 34 ................................ CGCTGATGTATATCAAAGTGGTGGCTATTGGTAT 1141 32 100.0 34 ................................ TGGCAATCGTTCTATACCTGTATGGAACTTGCGG 1075 32 100.0 34 ................................ ACCAATTACAACCTAGTGCCGACTGAGCAGATTG 1009 32 100.0 34 ................................ TAGTTAAATCAGGATCACTATAACGAGTAGCATT 943 32 100.0 33 ................................ CCCTTAGTTGATGCCGTTAACGTGTTAAAAGGC 878 32 100.0 34 ................................ AAACGGTCGCTGAATTGTGGATGGACACAAAGCG 812 32 100.0 33 ................................ GAACCAATCCATGTTTTGGGTGACTGCAACCAC 747 32 100.0 35 ................................ ATGAAAGCACTAAAATATGTAGCTTTAATCGGCAT 680 32 100.0 34 ................................ GCATCGATAGCGGTTTATCAACTTACGAAAAGAG 614 32 100.0 34 ................................ CACGTTTTGAGCCGATTCCTACAGCCTATCGACG 548 32 100.0 34 ................................ TAAAACAACAGTAGATATGGGAGCCGCTATGTCG 482 32 100.0 34 ................................ CAAGAACTGCATCACATGGCCAAAGATAAAAGTC 416 32 100.0 33 ................................ AGTCATTCATCAATGACGAAAGCGAGCAGGCAG 351 32 100.0 33 ................................ CAATCAATGGGAGCTGCAAGATCATAGGCGTTG 286 32 100.0 35 ................................ TCGCCCAGTCTCTTGGCTCGGTGCAAATCAAGTGG 219 32 100.0 36 ................................ TGGGGAGATAATAGTGAAGGAGTTAGCCGCTTCAAA 151 32 100.0 34 ................................ CAGTTCTGGTATCGAGAAGAACGCATCTACCACA 85 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 100.0 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Left flank : CGTGGATTGAAATTGGGTCTGTGCCATCAATCACGCTACGCAGCA # Right flank : TTAACTTAGAGCAATGCTCGATAATTCATAAACTCGTCGCGCCTCCCGCAGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 1275-767 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000090.1 Vibrio cholerae strain M1516 contig00090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1274 28 100.0 32 ............................ AAACGCTTTCTGGGCTTCGAATTGAGCAGATA 1214 28 100.0 32 ............................ TGTGAACTGCTTGCCTCACTTGGCCTTTCTTT 1154 28 100.0 32 ............................ TCAATTACGAGTCTGCTCGCAGATACATTAAA 1094 28 100.0 32 ............................ TCATCCGTTGGAAGCTGGCCGAGGCGATAAAG 1034 28 100.0 32 ............................ TCGCCCGACCCCAATAACCCTAACCTTGAGGA 974 28 100.0 32 ............................ TTGGATTTGCTTACTCAAGCGCATTGGATGCG 914 28 96.4 32 ..........................G. TTAACCATCACGATCACAAAGCCAGACGAAAC 854 28 96.4 32 G........................... GTTTGACGCATCAGTCTTAGTTGTGGCACAGC 794 28 96.4 0 G........................... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 ATTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATG # Right flank : TAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCATTGAGCCGCAGTGGTTACGGTTGTTGTGTTTAAGTTTGGTTGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGCTTAAATCATAAAAATCAGTAGGTTGTGGTTGTCGATTCCTTTGGCATTTCGTTCGGGTTTTTTCGGCAATTCAATATTGTTTGTCGCTGCCTAATGAAGCGGCAATGTATCTGGTGCTGAAAATTCAGTGTTATTTCCTCATTGAAATGTTGAGTCTGCGTGGGGTGAATGTTGCTGGCTCAAGTCGTTTTGAGCAGTTTGGTGCCTTTACTTACAGGCTGAAAGTTAGTCGGCAATTGAGCATTGTTTTGCGCTACCTAATGAAACAGCAATATGTTTGTTGCTTTAAGTTTCAGCGCCATGACCTCATTGAGTTATCACGCCAATGTGTGGTGAGTTGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9-1282 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000008.1 Vibrio cholerae strain M1516 contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 9 31 100.0 34 ............................... TTTGCAAGCTATCACGCTAGACGGTGTGCAAGAT 74 31 100.0 35 ............................... TTGTTTTCAAAAAATGCGCACACCTTCGGCCAACC 140 31 100.0 36 ............................... TTCTGTGTCAAACTCGACACCTTTAAATTCTTCATT 207 31 100.0 35 ............................... TTGGAGGAGGTCAACTAATGGCAGCGTTCGGCGGT 273 31 100.0 35 ............................... TTACATCGTGGCTTGAGATGGGTTTCGACTTCTTT 339 31 100.0 34 ............................... TTACAAAGCGTTTGAACGCTACAACAACGGCGAA 404 31 100.0 34 ............................... TCCATGCTTTTAGCTCTAGCGCCCAACGTTCCGC 469 31 100.0 35 ............................... CGAGTCGGGCGCTTATGTGGCAGCAACTCAAGGCG 535 31 100.0 34 ............................... CATCCGTGTAGTCATTGGTGGATAGCCCTTTGCC 600 31 100.0 34 ............................... CAGAATAAGGCTGAAGTAAAAAAGGTAATTGTTG 665 31 100.0 34 ............................... CAAGATTTTGATTTGGTTTTTGCGGTGCTCCACC 730 31 100.0 36 ............................... CAAACTCTCCCATCAAAACGTCTAAATCCGACTCGG 797 31 96.8 34 .............T................. CAAGCAAAGAAGCTTTACACAGAAAGCGTGTAGC 862 31 100.0 34 ............................... CCCGAGGACGCAGAACACTACGCGCACCCATCGA 927 31 100.0 34 ............................... CCAGGCATGTTGAATAAGATTGCCATCATCATCG 992 31 100.0 34 ............................... CCATCATCTTGAGTGGACCCCAACGCGTGGTCAG 1057 31 100.0 34 ............................... CAGTTACAGCACAAGTAAAAAAAGGCGAAAGAAA 1122 31 100.0 34 ............................... CTCTAGCTGCTTCGTTAAGTTGTGGGGCTTCTCC 1187 31 100.0 34 ............................... CAGAATAAGGCTGAAGTAAAAAAGGTAATTGTTG 1252 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 20 31 99.8 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAA # Left flank : ATACAAAGG # Right flank : ATAAGTATTGTCACATTATTGCAGGCAATTTGTTGCCCGTGAGCAAGTTTTTGCCTCGCCAATTTTCGCGTTATCATGCGCTTAAAGCAGAATAAGCGAGGATGTCAAAGCCATGACAAAAGATATTAGTCGGTACAATATGCGTTGGGTTGAAGGGGACACTTTACCTGAAGCTCCAAAGCCTAAACTTTCTCCGAAAGAAAGGTATTTAAAGCAACTCCAAGAGAATCATCGACAATCTGAAGAAACGTGGTCTTATGTCCAAGCAAACGAAGACCGTTATGCATTACAAAGAGCGGATGTCCTTACTCGCCGAAATGCCTCACAAATGCTTGATGACTCTCTTCGTGACTCACTAAGTTCGCAGTGTTCACTTGAAGAAGAAATGGCAAAGAATCATCAACATGTTCTTATTGCAGACTTAGAAGATGCCCATAAAATCTTGCACAACATTTGGTTGGAGTCTGGTCGTGATGTTGCTGCAATTGCTGCGAGTATCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 438-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTZY01000093.1 Vibrio cholerae strain M1516 contig00093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 437 28 100.0 32 ............................ ATATTGAGTAATCGTACCAGATACCAACATGA 377 28 100.0 32 ............................ AACTGGTGGAACTCTAGCGCATCGTTTAGGTT 317 28 100.0 32 ............................ GTTTTGATCAACCATTAATAAATAGGGAACGG 257 28 100.0 32 ............................ GCCAAGCCGAAGCCATGAGCAAGCAAGAGGCT 197 28 100.0 32 ............................ GAAGTAAACGTCCACCATGTTTCCAGACAATT 137 28 100.0 32 ............................ AATCCGCCTCAACCAGCACACCAGTTGTGGCT 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 ATTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGATGTTATGGAATAAGTTTCGGCAAGGTTCTCTAAAAATATTAGGTGGGAAGTTATTTTTCAAAGGTTTAGCTTGCGATGTAACTTTGTTGTATGACTTTCTGCCGTTAGGAATAGGCTCGACCATAAAGGTCTCATACTTTGAAGAGACTATGCAGAAACGTAGTATTTACATTCCGAAAAATTCGCTAAGCCATGAACACTGGCAACAATTGTTAGATCAACGTACATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AGCGCTATCTCCATCTTGGAATTTAATGTTAGTATTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //