Array 1 31290-32051 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEI01000086.1 Lentilactobacillus rapi DSM 19907 = JCM 15042 strain DSM 19907 NODE_205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31290 29 100.0 32 ............................. ACTTTTAGTAAGCAGCAAATATTTTCTACTAA 31351 29 100.0 32 ............................. ATCATTGATCATTGATATCGAATCAGGAACAA 31412 29 100.0 32 ............................. TACTACGATGCAGGCTGGTATAGCTGAGAAAG 31473 29 96.6 32 ............................C CATGAGGAGCGACTCAAGAACTTGGAAGTTGA 31534 29 96.6 32 ............................C ACCCATTGCCAGTTGTTGAATCTGTTGACCAG 31595 29 100.0 33 ............................. TTTTCAGCTTGCCGCCGGTTTGCTCGTACTTAG 31657 29 100.0 32 ............................. CTACGGAATAACTGATTAGGTAAGGTGAAGAT 31718 29 100.0 32 ............................. AATAACGGTTTCTCCCAATGCCAAAACGTCGC 31779 29 100.0 32 ............................. ATAGCACAATCTTTCTGCGAGGTGGGCGTGGT 31840 29 100.0 32 ............................. GGTTGACACCTATTTGGATAATTTGACCGACC 31901 29 100.0 32 ............................. GAGTTCCACACGCTGCTGATAAACGAACTTGA 31962 29 96.6 32 ............................C AGTATCCTTATACAATTTGATGATGCGATATT 32023 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GTATTCCCCACGTATGTGGGGGTGATCCT # Left flank : ACAAGAAACTTCCAATCATCAGAAGATTATTGTTTGGAGTTGCTACTAAAACCGAAGTGAGTTAACCCGGTCCGTGAGCCGAAACTCGAAATCTATTTTGAAAGAAGGGATGCCCGTGAATCAATAAGCCGATTGGCAACGATACACCCAAATATAATAATTCACCCCTCAAATAATTACTAAGAAACCCCAACGATTTCTTAACTTCATGAATTACCCCTCAATATGAAAAAAATCCCTTAAGTCCCTGCGTGTTAGCGGGGGCTTTTTTGTGCTTTTGTAAAATGATTAGGGATTTGAGATGGGCCTTTGTGAGTGGTCCACCATTTGCCATTTCAACAATCCCTTTTTCGTAGCACCAGCAAATATTTTTTGTTATTCTTAAGGTGGCTAATTGGCTAGGGGTATGGATTGGTGTAGGAAGGAACTTTCTAGTTCAAACTAATGAAAAACAGTTGAATTGGAATTTTCAAATGCCGAGATGACAGGCTTTCTTTAGT # Right flank : TCCTTGTGCAGTCAATGAACCGTCAATAATTCGGTATTCCCCACGCATGTGAGAATCCCGTTATTTTGAATGTTCACCGATCCAACAATTTCTTGAATTCATTAACTTAAAATATTCACGTCAAATGTTTCAAAATATCCTATAATAAAATTGTTTCTTGTTCCCAAAATGAAAGATGGTGATTATTATCAAATTTAAACGACTCTTACTAATTGCATTGCTACCAATTTTATTATTAACGATAACCTGTGCGCCGACTCACGCCGCTACTTGGCATCGAGGGACACCAACCGTATTACGTGGCCACTGGAAGACGAAAACTTGGCGACCATATAAGCAGTATAAAATGACTGGGCACGCGTATCTAAAAGTTCATCAAACCTGGTTCACTAATTCACCTGCCTTACCGCCCGTCGATCCGTCCAGTGTTATGAAGGTCTATTACAAGAAGGTCGGTCATGTCTACCATCTTGTCGGGCGCGACTTCAATAACGCCCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACGTATGTGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8188-8583 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEI01000072.1 Lentilactobacillus rapi DSM 19907 = JCM 15042 strain DSM 19907 NODE_116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8188 29 96.6 32 ......................G...... AATCGCGTCCTTCTTCGAAGGTTATCTGGGTT 8249 29 93.1 32 ......................G.....C GGGTACTTTGCTTGCATCCCTTTAGGATGTTC 8310 29 100.0 33 ............................. ATTAGTAGTCTTATAATTAGCGGTTCCCGTATA 8372 29 100.0 32 ............................. ACTATTCATTTATGACACCTCCTAGTAGAAGA 8433 29 96.6 32 ............................C CTCAGTTTTTGTGATACCAGTCACTTCGCCAA 8494 29 93.1 32 ..........T.......A.......... GTTCAACCATTAAGAACTAAAAATGAAATTGA 8555 29 86.2 0 ...........G.A....A.....G.... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.1 32 GTATTCCCCACATGTGTGGGGGTGATCCT # Left flank : TATATTGCGTGGGAATGTGTTGAGGCAATATACGCGCATCAAATAAAACCGATAGATTGCGAGGAATTTATATGAACAAAATTTCTATTCGTGGCAGTTTGCAGACGAAACAAATCGTAGGTAGTTATTCAGATGTTGAGAAGAAGATTATTGCGGATCTAGACTCCGTTCAGGAAAAGGACGGCAAAAAACCATTTTCAAAGATTGCCGATGAAGTGGTTGTTGAGCCATACCGGGACGGGGCGTATGCGTACCACGCATTATTAACGGAGGCGGCAAAGATGTACGATTTGTCGCCAGAGATTCAAAAGAGCGCCAATGTTAGTGATGAATAGTTTGATTTGGGTCATGGTGAAGACTTCCTGTTAGCTTGTTGTTGATAGGGAGACGTTGCCATGGCCTGTTTTTGTGTCGTTAAGTTGTAAGGGTGTTGATCATAAAGTGATTGAAAACAGACATTTGCCGAATTGAAAACGCCGGTTTAATAGGGATCGTTTAGG # Right flank : TAAAAAGGTGTATCATCAATTAGAGTAATAACTCCAACTAATTAGAGCCGCCTTTTAGCGCCTGCAAGCGTTCTTTAATGAGGACTTGTAGCTCTGCTAAATCCGCTTCGGTTGCGTAGTTGCGAATAAATCCCCGTGCTTGGGATCGGCGGGAAATATAACGTGTCCGTTCTTTATGGGCCTGATCCCATTTCTTATTGGCACGTTTACGAGCTTCTGTATAAGGCTGTTTAGCCATGGTGCTCACCTCGTTAGTTTGATTGAATTTGAAATTGAGATATGGTATATTAACTAAAGAAAAGAGAGCACTGGGATTGCCCCCCAATGCCCTCAATCGTGAGCTGGATACCGTTTGAATGTGGCTAACCGTAATGGTTAGTCTTTTTTGATTTTATGATAAGCACATGCCAGCAAGTAAATGCCATAGCACAGCCCGATAAAATCAACTATCCACGGGTCCGTCACGGATTCTCCAGGTTTCCATGTCGGCTACCTCCCAT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACATGTGTGGGGGGGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24915-23784 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEI01000058.1 Lentilactobacillus rapi DSM 19907 = JCM 15042 strain DSM 19907 NODE_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24914 29 96.6 32 .....T....................... GTCGTCAGTTTGTTGGACAATGTTTATTTTTA 24853 29 96.6 32 .....T....................... TACTCGCGCCGAGTTTGACAAACGAACTGCTG 24792 29 100.0 32 ............................. ATATCGTCCGTCCCGCTATCTGCATTCCAATT 24731 29 100.0 32 ............................. AATTGAATCGGTAGTGCCATCAACGGTTGCCA 24670 29 96.6 32 ............................C GACGTCATCGCCTGGGATGTGACTTCTATGTT 24609 29 100.0 32 ............................. TGGTCGCGATTGCTCCACATCCACTGGGATGA 24548 29 100.0 32 ............................. GCTAACCGCATTTTCAGCAATTTCAAACATCT 24487 29 96.6 32 ............................C GGTGGTCTTTGATAGCGAAAAGATGGCAGATG 24426 29 100.0 32 ............................. CTGGGTGACGATGTGGCAAACAAAGCCATTGA 24365 29 100.0 32 ............................. ATCCACCTCTAAACGTCTTAAAGCGAGCTGTG 24304 29 100.0 32 ............................. ACCACATTAAGAAACGGCAAAGCTCCTGAGTG 24243 29 96.6 33 ............................C GTGCCGCACACAGGGATGCTCTGTTTAGCAAGA 24181 29 100.0 32 ............................. GCAAAAAGCTATTTAAGAGAGTATCACGATTG 24120 29 100.0 32 ............................. GATATAATTAGTTTTGTTGGGAACTATTTTTA 24059 29 93.1 32 ............C...............C TTAACTGGCACACCAAAACAAGTAGCATGGGC 23998 29 93.1 32 .............A..............C TTGTCCAAAATTAAAGGCTGCTTATTCGCATC G [23981] 23936 29 89.7 32 A................A..........C TTTTCGCGACGCCAGTTAAGGCATAATTCGTT AT [23923] 23873 29 89.7 32 .............A.......A......C CCATATAGCAAAGGAATTCGGAGGGCATTTGT 23812 29 93.1 0 .............A...A........... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 96.9 32 GTATTCCCCACGTGTGTGGGGGTGATCCT # Left flank : ACGAAGGACAAAATTATCTCGATTGGTGCGATTAAAAGAACTAAGAATGGTGAATACGACCAATTCGATCAATTGATTCAGATTGACTGTGAAGTTCCAAAGAAAATAACAGAATTGACTGATATTTCTTCAGAACTATTAGCAACCGATGGGGTTGACTTAAGCTTGGCTTTGCAAGAACTCAAGAATTTCGTTGGCAGTTCAACAGTCGTCGGATATAATTTGCGGTTTGACCAGGAGTTTCTTTCGGAAGCCTTTCATCAAACTAATCAATCTGATTTAACCAATAAGATGCTGGATATAATGCCGGTGGTAAAAAAATCAAATCAGTTTCTTGATAATTATCGACTGAATACCGTTTTAAAGGCATATCAAATTGATAATTCAACGCCACATCATGCATTGGCGGATGCAAAGGCAACATTAGACCTAGCAATCAAACTCATTGAAAAGGGCCATTTGCAAATTTGAGAATGCCGTCATAGCAGGGATCCTTTAGT # Right flank : CATGAATGCACATGCGGCCAAGATTATTTACGGTATTCCCCATATATGTGGATATAGTAATGAAAGGAATGCCGATACCCAATAAGGTAGTATAGAGTAACAAATGTCAAAGAAGGATTGAGTTTCAGCCAAGCTCATGAAACAAGTTGAAAGCAATATTCTTAAGGTATAACATAACGTTAACAATTATTTTTTGGAGGCATTTTTATGACGACCATCGGTTTTTGTTCACCGTCGACACCTATTACTGCAATCTCACCGATTCGTTTTAAACGAGCGCAGAAATTTTTGACCAGTAAAGGGATCCAATTGATTGCCGGCAATTTAACGACTAAAAGAGACGCTTATCGGTCTGGTTCAATTCGGCAAAGAGCTGACGAGGTTAACGAATTAATTCGTAACAATTGTGTCGATATCATTATGACTACGATCGGTGGGACCAATACCAATTCAATTTTGCCTTACATAGACTATGATTATCTAAATGACCATCCCAAGAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //