Array 1 7896-6850 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JSVF01000003.1 Actinobacillus pleuropneumoniae strain 1022 contig_chr00003, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
      7895	    28	 100.0	    32	............................	GAATTAAGCACAGAAGCACCTACGAACGACTT	
      7835	    28	 100.0	    32	............................	GATTGACAGCGACTGGAAACCAGCAGGCGCAA	
      7775	    28	 100.0	    32	............................	TGTTTTAGCTGCTCAGCAATCGTCTTTTTCAT	
      7715	    28	 100.0	    32	............................	AGACTTCTCAAGTAAAATGACTTTTTCAGCAA	
      7655	    28	 100.0	    32	............................	TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC	
      7595	    28	 100.0	    32	............................	TACAATTTTACGCACACGCTTAACAATACTTT	
      7535	    28	 100.0	    32	............................	TGCCACATTTAACCGCTCTTGCGTGTAGATTT	
      7475	    28	 100.0	    32	............................	AAATTGTGCTTATCTTTAACTTCACCGGTTTC	
      7415	    28	 100.0	    32	............................	TACGCCTGAACCCTGTCCTTTCCCATTACCGT	
      7355	    28	  96.4	    32	...................A........	TTATGCTGATAAAATGATTCTTAAAGAAATAA	
      7295	    28	 100.0	    31	............................	CTACGGGTTGCTACGCCAAACCTTGACAATC 	
      7236	    28	 100.0	    32	............................	ATATCCACTAATAAAAGTATGGCTTCGCTTTC	
      7176	    28	 100.0	    32	............................	TTTTTAAAGGCTTCTAAAATCACTGAAGAAAC	
      7116	    28	 100.0	    32	............................	ACACCAAAACTATGCCGGTAATCTTTATTTAA	
      7056	    28	  96.4	    32	........................T...	ATTCGCCCCGACGATAAATTTCTAACTGCTCC	
      6996	    28	 100.0	    32	............................	AATGTTGAAAACACTCGGTTGGTGGGGGAAAA	
      6936	    28	 100.0	    32	............................	TCTAGTAAAAGTCCAAGCTGATGACTGACTGC	
      6876	    27	  89.3	     0	.....................C-.C...	|                               	
==========	======	======	======	============================	================================	==================
        18	    28	  99.0	    32	CTTCACTGCCGTATAGGCAGCTTAGAAA	                                	       

# Left flank :   ATAAAAGTGCAATTAACTGCAGAGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA
# Right flank :  TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//