Array 1 147193-150338 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKI01000002.1 Rivicola pingtungensis strain DSM 29661 Ga0244579_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147193 29 100.0 32 ............................. GGCAAACTGCACTGGAAGCGGCTATCTCAGCG 147254 29 100.0 32 ............................. GCAGCCAGTTGTTCATCGTCCTTCATTTTCAG 147315 29 100.0 32 ............................. ACAACGCCATCTGCAAAATCATCGACGGCAAA 147376 29 100.0 32 ............................. GTAAAACAGGTCAAAATGCGACGCGCCTACCT 147437 29 100.0 32 ............................. CAGGTTGACCAGCTCACTGACTCAATCAAGGC 147498 29 100.0 32 ............................. TCATGCATGTGGTCGCGCACAGCCCCAAATAG 147559 29 100.0 32 ............................. TCATGATGACCATCGGATGGACGCCAAGCAGC 147620 29 100.0 32 ............................. TGTTAAGCTGAACCGCGCCTTGTGGGTGCTGG 147681 29 100.0 32 ............................. CCAGCGCGATTTTTCGCGCTCGCGAAATTTTG 147742 29 100.0 32 ............................. CGGCAAGAAAAATCCGATTGAAAGGGAATAAC 147803 29 100.0 32 ............................. ACGTGTCGATGCGGTCAATCGCTAAAATCTTG 147864 29 100.0 32 ............................. AGCGGGAAAAACAGCCCATGGCATACCGACCA 147925 29 100.0 32 ............................. GCGCATAGGCATGCCGTAGCCGTCCAAAAATT 147986 29 100.0 32 ............................. CGCTGGAAAGATTTGGTGAGTGAGCGGTCTAA 148047 29 100.0 33 ............................. CATGCCCGTGTGGCCTTGAAGGATTTTTTTTGA 148109 29 100.0 32 ............................. CACCGCCACCCCCAGCGATTCGCGGGGAATCT 148170 29 100.0 32 ............................. CGCGCATTGAAGCCGAAAAGCAACTCTCGGAA 148231 29 100.0 32 ............................. ACTGGTTTAGCCCATGAAAAGCTTAACGAAGG 148292 29 100.0 32 ............................. ACAGACGAGAGATAGACCGGCGGGCCGTGTTT 148353 29 100.0 32 ............................. GCGTTTTTTGCCAAGAACTACGCTTTGGCAGA 148414 29 96.6 32 ............................C TCATGGTGTGGTTCTCGTCAATCGCGCAGCGG 148475 29 100.0 33 ............................. TAGAACCCGCCCGCGCGCTGCGCTATGTCCCAC 148537 29 100.0 33 ............................. CGGAACTCCCCATCGCCCAGGTCCCCGCCGCGC 148599 29 100.0 32 ............................. TGGCTGCAGAGTTGTTTGGCGCGGGGAGCATC 148660 29 100.0 32 ............................. CCGTACTTTGTCGAAATGGTGCTGAAAATCAA 148721 29 100.0 32 ............................. ATCAACCCCATTTCCGGCCTGAATGGCTTTGG 148782 29 100.0 33 ............................. CCCCGCTGTGGTAAACGACACAGGCAGGCCATG 148844 29 100.0 32 ............................. TCAGGGTCTTCAATATGTGCCTTCTTCAGCTC 148905 29 96.6 32 ............................T ACTGGGCCGTGCGCGCCACCGGCGGCCAAACT 148966 29 100.0 32 ............................. GTGCGGCCGATGCGGCCAAAACCGGAACCCGG 149027 29 100.0 33 ............................. CGGGTGCTGTAATGGCGCACCCGCGCGAGACCC 149089 29 100.0 32 ............................. AATCGTTCCGATGATGACAACATCAAGCGAAT 149150 29 100.0 32 ............................. GCAAACTCGACAGCATCCAGTCGGCCGTTAGC 149211 29 100.0 32 ............................. GTCGGGCAGTTATTGCCGCTGAAATCGACCGC 149272 29 100.0 32 ............................. ACGGTTGGGTCAACCGGATACACATGGCGCAC 149333 29 100.0 32 ............................. ATTTGCCATCGCGCACAACGTAGGTGATCGAG 149394 29 100.0 32 ............................. CTGGACGCCGCCGACGCCCGGATTACCGGCCA 149455 29 100.0 32 ............................. CTGGCCATCTCGGATGGCCCACTCCGTGCCGG 149516 29 100.0 32 ............................. TTTCGGAATTGTGTACTGCGACAGCGCATCTT 149577 29 100.0 32 ............................. CGCGGCTGCGCCAAGTTGAAGCGCATGCCGCG 149638 29 100.0 32 ............................. CACCTGATTGTCCACCGCCATCACCCGGCCAC 149699 29 100.0 32 ............................. TGCCGGTATAGCCGTCAGCGACCGCCGCTTGC 149760 29 100.0 33 ............................. CACAGCCGCAGCCGCAAGCACAGCCGCAGCCGC 149822 29 100.0 32 ............................. ATTTGTTTTCTCTCCAGTAAACTGCGCTAAGC 149883 29 100.0 32 ............................. ATCACCAAATGCAACGCAGACGAAATCCAAAC 149944 29 100.0 32 ............................. CAATAACCTTGCCGAAATTGATTGGATCAATG 150005 29 100.0 32 ............................. CAAGCGATGACTCAACGCCAATCTGACGATAT 150066 29 100.0 32 ............................. TCGATGAATACGACTGGTTGGAAGCTGAGGGA 150127 29 100.0 32 ............................. CAGGCGAAATTTTTCAAAAAATCAGATGTGGC 150188 29 100.0 32 ............................. ATGCAACGACATGGCGCAAAAAAACTGACGTG 150249 29 100.0 32 ............................. CCGCCGCTGAAAAAATGCGCCAGTGGATTGAG 150310 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.8 32 GTGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : CGCCAATTTTCACGTGCAGCTCACGCAACTGCCCCGACACCTGGGTGCCGACATCCACATAATCCTTGGGCTGCACACTGCCCAGCGCGGTGACCACTTTTTCCAGCGTGCCCACGGCTACCGTCTGGGTGACATAGCCCGGCTGCGCCGCCGCCGACCACTGCCGCCACCCCCACCACCCGGCCGCCGCCAACAGCATCACCACCACACCCCACCCGCGCCAGCCCCATGCCGGCCACTTGCCTGGAAATTTCACGCCATCCTCCCCTGTCCGCCCCGGCCACACGCCGGGCCTGAACGCATCAGACCATTGAAACAGAGCCATGTGTCCCCAGGGTGTCGAGCGCGCCGGGTTTTGTAACGTAGTGTAACTGGCAGGTTAAAAAATGCTAAATTAATGGTCGATCCGGATGGCCGCCTGGAGGGAGTTCACCACGGAAAAAGTTGGTGGATTTTTGATGGGGGAAAAAGCTGTTTTGGATCAGTTGCTTGGATTTGGT # Right flank : GCGATTTTCCCCTGGCGCAGTGATGGTCAGCCTCGGCATGGATCGCCAAATCACGGCGCTGGACAACCTGCTGCGCGAGCTCGACGCCCTGGGCATGGACGTTGGCGCGCTTAGGCTCGAACTGAAATCCATGCGCTACCACCTCGAAATGTTCGACTCAGCAGCGCGAGAGATTGGCGAAGTAATTGGCGAAGTAATTCGCCCTCCGTTGCGCTGCATGATATCGTGATATTTCCGGCCTGCTGGTGCAGGCCGGGCCTACCGGAGAGACATCATGATGAAGCGTATATTGCTGGCAGTGCTGCTGGCCGGCTCGCAATCGGCGATGGCCAAGGACTGCGAAACAGAATCAGGCGGGGGAACAATGTCTGCCGTATATGCCTGCATGCAGAATGAGCAATACAAGTTCGTAAACGCTACCTATCAAAAGCTAGAGCGAAAGCTGTTGCGAAAACCCGACCTACTGAACGATCTTCGCGCCTCCCAGGTGAGCTGGGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98766-99668 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKI01000004.1 Rivicola pingtungensis strain DSM 29661 Ga0244579_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 98766 37 100.0 36 ..................................... AGAAACATGCGCCGGGGTCGGCAGCTCCATGCTGGC 98839 37 100.0 34 ..................................... TCCTTGGTGCGTTTGCTTCGTCGATGTAGTTATA 98910 37 100.0 33 ..................................... GTCGGTTTGGAAGTCGTCTTTTTTGATTCCGCC 98980 37 100.0 36 ..................................... TTGCTTGGCATTGTAGCTGGTGCGGGCCATGACTTT 99053 37 100.0 35 ..................................... CGGGTCATTTTGATCTGGATGCCGCCGTAGGCGCA 99125 37 100.0 35 ..................................... AATACTGAGGCTTTCGAGCTTTATAAGGCCCGGCA 99197 37 94.6 35 .........C........A.................. CACAGTGAGAAAACCCCAAGCTTTCGAGTGTCGCC 99269 37 94.6 36 .............T....A.................. CAGTACATCGCCATCGGCAGTAATCCCGATTATGTT 99342 37 94.6 35 .............T....A.................. CAGGAAGTGGCGGCAGAATTGTTTGGCGTGGGGAG 99414 37 91.9 35 .............T.G..A.................. CAGGAAGTGGCGGCAGAATTGTTTGGCGTGGGGAG 99486 37 94.6 36 .............T...........A........... AACCATGGCGCAGCAGTCAAGCGCCCAACTCGACCA 99559 37 91.9 36 .............TT...A.................. AGCCAGCCTTTGCCGCGCGGCAGCCGACGGCGGGGC 99632 37 91.9 0 .............T....A........A......... | ========== ====== ====== ====== ===================================== ==================================== ================== 13 37 96.5 35 GTCACCCGGTGGGACACCGCCGGGTGTGGATTGAAAC # Left flank : GCGCTCAGCCAGATGTTTGAGCACGACCACGCCGCCAGCCGAGGCCAAATGAGCGCCCGCGCCCTGTATGTGTTCCGCCACGACAGCGAACTGGGCAACGCCCCTGCCCATCGGCTATTTGACCTGATTACCATCCGCCGACGCGAAGACGTGGCCGTGGCGCGCCACTTCAGCGACTATCAAATCACCATCAACCGCGAGCACATCCCTGCCGGCGTCCAGCTGGACGAGCAGGCATTCTAAGCCCACATTGACCGCGCCCCCCCCGGCGCGGACAATGCCCACACCCGCCGGCCCCAGCCCAAGCGCCCAGGATCGCCCCACGCGAACCCCAAGCGAACGGCCAAACCCGGCGGGGTTCGCGCTGGAGTTAATCAATTGAATAAAAAGCACTTTTTTCTGGATGCATGGAAATGTGCCTGCCCACCATTCAAGGTGGGCGGCAGGTTCGCGCGCGACGCAGAAAAATGGCTGGAAATTCAAGGGGTTTCTGGCGCGAA # Right flank : CCATCGACTACCAATGGCAAACAACACCATGAAGAACATCAGACTGGCCTTCTACGTCCACCCCGACGATGCCCCCGCCCTGCGCGCCATCGTCGCCCAACTCAACGCCGCGCGCGAAGCCCACAAATCGCCGTTCAAAGGCGGCCCCTACAGTGCCCCCGCTGGCGTAAAAATCGGCGACACCATCACCGATATCGACGGCCAGGAATGCACCGTCTGCAAGTTTTCCAACGCCGACACAACCGCCGGCCAAATCCCCTGGCCCATGGCCACCGCCGGCCAAGGCAAGCCGGCGCCGGTCATTACCGGCGACCTGGTTGCCGCAGCCCGCGCCGAGGGGATGACCGCTACGTGCAAACTTTTTGGCCTGAGCACCGGCGTATGGCCGCGCGTGCGCACCGTGCTAGCCAAGCATTTCCCCAATGAGTTTTACGAACCAAGAAAAGAGATAAGGTCACCCGGTGGGTCACCACCGGGTGTGAATTGAAACCCGTGACGGG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCGGTGGGACACCGCCGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 1 82399-82607 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKI01000007.1 Rivicola pingtungensis strain DSM 29661 Ga0244579_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 82399 28 100.0 32 ............................ AGCCGAGCGGCATGTACAGCGCGCTGATCTCG 82459 28 100.0 32 ............................ GAAGCCGGTCGAGATCATCGGCGTTCGCGCGT 82519 28 96.4 32 .........................C.. GACGAGGCGGATGCTGTGGAGGTTGAAATGCG 82579 28 75.0 0 ......GA.....C.A..C.TC...... | C [82604] ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTGAACTGCCGAATAGGCAGCTGAGAAA # Left flank : TGATCGAAGGCGTGCAAACCCAGGCCCACGGCGCCGTGCAAAGCATGGGGGTGGGCATGCGCGAAATGGAAGAAGGCCTGAAACTGGCCGAAGAAACCGCCTCGGACAACGGCGAAGTGCATCGGCTGGTCGAACAATTGTTCCACGCCATCGACGGCATCGCCGCCACCAGCCGCGCGCACAACGACAAGGTCAAACAAGTCAGCGACGCCACGCAAAGCACCAGCCAGGTGCTGGCCGAAACCGGCCACACCACCCAGCAAACGCTGTTTGCCTCCAACCGCCTGCAACAACTGGTCAATCAGTTCAAGGTAGGCTAAGCGCCAACCCGCCGCGCCACTCCCCGCGCGGCGGGCCTCCCCTGCATCAACCCTCTTTTTTGCCGCCATATTTGGGTGTCGCAAAATCAATGACTTATTCAACGGCAGAAAAAAAGGGTACACTGCGGCATGCGCTGGAAAAAGCCTGACCAGGCAAAGACTTGGCGCAGAAGCGGTCTA # Right flank : AATCCCCTGCACCGGGCCGGCATGTCCACCCGCCCGGCGCTTCACTTTCTTGGCGTCAGTCCATCGCTTTGCTGATGCTGCAAGCGCTCATGCCGAGCGCGTCTTGGCTTTTCGTCCCCGCCACCACGCCGCCACGCCTTCCAGATAGCTATACACCACCGGGGTGACGATCAGCGTCAGCACGGTGGAGCTCACCATGCCGCCAATCACCGCGTGGGCCATGGGCGCGCGGGTTTCGGCGCCTTCGCCCAGCGCCATGGCCAGCGGCAGCATGCCAAAAATCATGGCAAAGCTGGTCATCAGGATCGGGCGCATGCGCACGCGGCCGGCTTCCAGCAGCGCGTCGTGCAGCGACATGCCTTCGCGGCGCGCCTGGTTGGCGAAATCCACCAGCAGAATGCCGTTTTTCGCCGCCAGGCCCATCAGCATGATCACGCCGATCACCGAGAACAGGTTCAGCGTGCTGCCCCACAGCAGCAGCCCCAGCATCACGCCGATGA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13698-14013 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKI01000001.1 Rivicola pingtungensis strain DSM 29661 Ga0244579_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 13698 36 100.0 34 .................................... TTGTAATTGTGAAGCTCTTTCATCTTCACTGTGG 13768 36 100.0 33 .................................... TTGATGCGGTAGGTGTTGCCGCCGATTTCGATG 13837 36 100.0 32 .................................... ATGACAGAATGTGTTATTGCTGATGGCACACA 13905 36 100.0 33 .................................... TCCAGGTAAAATGTGCTGTAAATCGACAGTGCC 13974 36 88.9 0 ......C.AC.......................C.. | TTTA [13994] ========== ====== ====== ====== ==================================== ================================== ================== 5 36 97.8 33 CTCTAGTGGTTTCCCTGATCTTTAAGGGATTAAGAC # Left flank : CACCCCGGACAACGGCGGCCTGAAATACTGGCTGAGCGTGCTGGACGGCGGCGCCGGCCTGGACACCGTCGCCAGCGGCTTTTTGGGCAGCCAGGAATTCAAAACCCTGTACGGCAGCGCCCCCAGCCACGCAGATTACGTCTCGCGCCTGTACAGCAATGTGCTGCACCGCACCCCAGACCAGGACGGCTACGACTACTGGGTAAACCTGCTCAACAGCGGACAAATCAGCAATGTGGTGGCGCTGGTGCAGTTCTCCGAATCCGCCGAAAACCAACTGATGGTGCTGGGCGCCATCCAGGATGGCATCTCGCTGTATGCCTGACCCCGGCGCACTGGCCGGCCCGAATCACCCACACGGTGCTAGGCAAATGGCATGGCCGGCGCTATCATAAGGGCGTTTTTTGCGGTCGCTGGGGAGACATCTCGGCGCGGACAGCGAAAAGTTGGGAACACCCCCGGCAAGCGCTTGATTTTGCGCGGGAAAAACAGGGGGTGCT # Right flank : CCACCCCGCCCCGCCTTCCCTTTCCCCACCGCCCCCCCAGGAGCCCGCCATGCCTCGCCTGCTGATCTCTTACCGCCGCGCCGACCCGTTCAGCGTGCAGCTGGCCGACTGCATCGACCGGCAATGGAGCGCCGAGCATGGGCCGGGTTCGGTGTTTCTTGACATACGCGCCTGTCAGCCCGGCCTGCCGTTTGACCAGGAAATCGATCAGGCGCTGAACCAGGTGGACGCCGTGCTGGCGCTGATTGGCCCCGGCTGGGCCGAAGAATTTGACCGCCGCGCCGCGCAAGCGGACGGCGAGCTGGACTGGGTGCGGCGCGAGCTGGCCCACGCGCTGGGCCGCGTGTATCTGCCCGTCGTGCCGGTGCGGCTGCCGGGGGCGGCCGAGCTGGGCAGCCACCCGCTGCCCGCCGAGCTCGCCGCGCTGACGCAGCGGCAAGGCGCACACCTGGCCAACCCAACCCAAGCCGCCCTGCACGCCGAAGTGGCCGAGCTGCTGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAGTGGTTTCCCTGATCTTTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 15503-15817 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKI01000001.1 Rivicola pingtungensis strain DSM 29661 Ga0244579_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 15503 36 100.0 36 .................................... CCTTGACGCTCAGCGTAGCTCTTCACTTTGTGTGCC 15575 36 100.0 34 .................................... CCCGTGACACCCAACTCGTTGGCGATGGCTTTTG 15645 36 100.0 32 .................................... GAACCATACGCTGAGATTTTTATCCATGGCAG 15713 36 94.4 33 .........GC......................... TCATCTGCTATGCTCTCGATGTGAGTCCACATC 15782 36 91.7 0 .........C.......................CT. | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 97.2 34 CTCTAGTGGTTTCCCTGATCTTTAAGGGATTAAGAC # Left flank : GCAGCACCCCAGCCCGGCCATCAGCCAGCTGATCCACGCCCACCTGCCCGAACCCTCGCCCAACGCCGTGCGCGACGGCGGCCACGCCAGCGCCCTGGCCTGGCAACTGGCCAGCGAACTGCACCCACTCGCCAGCGCCGCCACCCCCCGCCCGCGCCTGCACCTTTTTATCGCCGCCCCCATCACCCTGGCCTTCTGCCTGGGCCAATACCTGCGCCGCCTGCTGCTGGACGTCACCATTTACGAATACCAAGCACACGCCACCCCAGCGCATTACCTGCCCACCCTCACCCTGAATGCCAAGGACATCGACCAGCGCAACTGAACCCAGCCGACAGAAAACCCGCGCACCGGGATTTCTGGCTAGGCAAACGGCATGAACGGCGCTATCATAAGGGCGCTTTTTGCGGGCGCTGGGGAGACATCTCGGCGCGGACGGCGAAAAGTTGGGAACGCCCCTGGCAAGTGATTGATTTTTTGCGGGAAAAACAGGGGGTGCT # Right flank : CCACCCCAAGCCAGCCTCCCCGCTGGCTTTTCTTTTCTCTACACCAAAAATCCCAATCACATAAAACGCCCACTTCCGCCCCCATCCCACCACTCCCACGCCCCACCCGCCCACTTGTCATGCCTTGCCCCCACGGGCACAATGTGTCGATGTGACGAATGAATGCACCGGCAGGATGGCCGGGCTGGGGGCGGGATGGCTGGGTGGCTGGAACAGGCGCGCACGGGCGAGGGCCTGGGGTGTTTGCCGGTGCAGTTGGCGTGCGTGTCCGACAGCTTGCAGCTGGGCGATTTTGCCGGCCCGCTGTGGCGCAGCGGCTTTGGTTTGGCGTTAAAGCGCCAGCTGCCGGCCTTGTTTGACCTGCTGTTTGCCGAGCAGGCGCGGCTGGGGCGTTTGTATGCGCTGCATACGCCCACGGCGCAGGTGCAGCCGGGGCAGCCGTTTACCCTGGGCTTTACCTTGTTTGGCCCGGCCAGCGCGCATGCCCAGCTGTGTGTGCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAGTGGTTTCCCTGATCTTTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 24385-24699 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKI01000001.1 Rivicola pingtungensis strain DSM 29661 Ga0244579_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 24385 36 100.0 34 .................................... TTTGGAAGATTTTTTTTCTTCGATCCACTCAATC 24455 36 100.0 33 .................................... ATACAATCGTCGGGAGGCGGCACATAAGGTTTG 24524 36 100.0 33 .................................... AAATGTCGGCGCCCTGCGTAACAGATGTGCTAC 24593 36 100.0 34 .................................... GCATTTTTACCGCTATACCTAATATAATATTTTC 24663 36 97.2 0 ..................................T. | A [24694] ========== ====== ====== ====== ==================================== ================================== ================== 5 36 99.4 34 CTCTAGTGGTTTCCCTGATCTCTAAGGGATTAAGAC # Left flank : CGGCACCTGACGGGTAAAAATCAAAAAGCCCTGTTTTCCATTCAAGGCGGGCTATTGGTTTTCAACAGCAATATTCAGCCTGACACGCTACAATCTTATCTTGAAAAAGACCCATTGCGACGCATCAATATCGGCTGTGTTGCCAGCAACCATGGCACAAGCAAGCCCGCCGGCTATTTCCTGGCGCCAGCCATAGAGATAGATGATCCTTCAAATATCGCTCCATGCGAATTTTATCCACACCCAAAAGCCGCCACTGCCTTTTTGTTTAAACTTATTGGCTTGCTGCAAACACTCGGCACCGTTCCCGCCATTGATATGGACAAGTACGCAGAAAAGTTGATTTAGCCGTCCAAAACCCACTAGGCAAACAGCATGCAGTGCGCTATCATCGCAAGGCGTTTCGGGGGTGTCTGGGGAGACATCTCCCCGCCCGGAGCGAAAAGTTGGGAACGCCCCTTGCAAGATGCTGATCTTGCAGGATAAAAGCAAGGGGTGCT # Right flank : CAGTTGTATTGCCTTCACATCACATGATGACAAAGTGTTGCAAACACCCAACGCAAGCCAAATTTTTCTGTAAAAACCAGCAGCGCCCACTATCAGCCACTCAGCCATCAGGCATATGCTTTACACATCCACTGTGCGGAGAAATGGCATGGCAAGTTCTCGTCGGATGTTTCTGGTGTGCTACGACATCGCTGATCCCAAGCGCTGGCGCAAGGTGCATGAGGCGGTGCAGGCGCATGCCGTCAGTGGACAAAAATCGGTGTATGAATGCTGGCTGACTGCGGGTGAGCATCAGGCTTTGCTGGCGCGGCTGGAGGCGGTGATTGCGCCAGCAGAAGACAAAGTGCATGTGTTTGCGCTGGATGCGCGGCGCAAGGTGCTGCGCTTTGGCGTGGCGCGCGCGCCGCAGTGTGATCCTTTCCTGATTGTGTGAGGCTGTCATGAGCTGCCTGTATGTGGATCGTCGCGGGGTGGATTTGCGGGTGGACGGTGGGGCGCTG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAGTGGTTTCCCTGATCTCTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 119984-127217 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKI01000001.1 Rivicola pingtungensis strain DSM 29661 Ga0244579_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 119984 29 100.0 32 ............................. GCAGCATCATGATGGACGATCGTGATTTATTG 120045 29 100.0 32 ............................. TGTGCGCTCGCTGAGCGGGCGGTAGGCCGTCG 120106 29 100.0 32 ............................. GATTCAGTCAAGCTAGAGCGCATCACCAAGGC 120167 29 100.0 32 ............................. CCATGCCCAAGATCGTGACCGGCGATAGCGCC 120228 29 100.0 32 ............................. GGCAGCGTGTACACGCTTCCACTTTGCCCGCA 120289 29 100.0 32 ............................. TACAGGCTGACCGGCGATCAGGAAACACACAT 120350 29 100.0 32 ............................. TTGGTGTCGGAATTCGCCGCAACCATCACCGC 120411 29 100.0 33 ............................. CTAGGCAGCGTGCTGTATCCGCATGTGCATTTC 120473 29 100.0 32 ............................. CGATAGTGCTGGTGGAACGCGACGTCGCGCAC 120534 29 100.0 32 ............................. ACCGGTTGTTGCCTTTGGCGTTTGGCCATGTG 120595 29 100.0 32 ............................. ATCGGGGTGGTGATCTTCTCCTGCTCGACGTT 120656 29 100.0 32 ............................. CTCGCCATGGTGGCAGGCGCGAACACCTCGGA 120717 29 100.0 32 ............................. TGCCCCGGCTATCCCGGAAGGGACTGTTGGGG 120778 29 100.0 32 ............................. AAATCCCCGACTTCTGGGAGCGCTACACCGCT 120839 29 100.0 32 ............................. GCGACTGGGCCAGTTGCATGAAGGCGGACATC 120900 29 100.0 32 ............................. CATTCCCGTGTGGCCTTGAAGGATTTTTTTTG 120961 29 100.0 32 ............................. CCGCCGCCCAGGTCGCGATGGCGGCGGCAGTT 121022 29 100.0 32 ............................. GCCAGATTGCGCGCGATTGTCTGGCGTCCAGC 121083 29 100.0 32 ............................. TGTTGCATCCAGATACTCAAAAAGCGGCGCTG 121144 29 100.0 32 ............................. GAATGGACATCAACGAAGCCATTGCCCACTGC 121205 29 100.0 32 ............................. TCTTGTGCGCCTCCGGCACGCCGCCGGCCAGG 121266 29 100.0 32 ............................. ATGGGCCCGGACTACCACGAAAACGCCACCTC 121327 29 100.0 32 ............................. TTCCAGGCGGAAGAGATTTGCCGCTGGTTTGG 121388 29 100.0 32 ............................. GGCTTGTGCCGGTCAAGATGATTGAGGATTCC 121449 29 100.0 32 ............................. AACGGCAGCAGCTAATACAAGCTCGCCCGGCC 121510 29 100.0 32 ............................. CCTGATGGCGTTTGTGGCATGCACAACATGAC 121571 29 100.0 32 ............................. CGCTTTCCGCCGCCTACATCGCTGGTTCCAAT 121632 29 100.0 32 ............................. CCCGGCGCAAACTGGATGAGGTGATTGCCAGC 121693 29 100.0 32 ............................. CCCGGCGCAAACTGGATGGGGTGATTGCCAGC 121754 29 100.0 32 ............................. TTTCGTCGGGAACTGATCGGCCATTTGGTCCA 121815 29 100.0 32 ............................. CGCTGGCCATCGGCTCGGCCGAGTATTACACC 121876 29 100.0 32 ............................. CCGGACGCCCACGGCAAAGTGCCGAAGGGCTT 121937 29 100.0 32 ............................. CATCAATGCGCGCATTCTCGGCGGCCAGGTCA 121998 29 100.0 32 ............................. CGCCGCTGCGCGCTGGCGGCATAGTCCGGAGC 122059 29 100.0 32 ............................. GCTGCCGAGCCACTCAAACCGTCCGCCCGGCA 122120 29 100.0 32 ............................. CAGCTGGCCAAGGCGGCCCGGGCGGCAGCAGA 122181 29 100.0 32 ............................. GCTAAGGGTGAAGACCTGATTGCCATGCTGAT 122242 29 100.0 32 ............................. CCTGTACGCCAATGTCTGGCAAGTGCGCAACG 122303 29 100.0 32 ............................. TGACCGTGGCCAATCAGGCTGCCCGGCTGGCG 122364 29 100.0 32 ............................. ACGAAAACCTACGAGGAGCCAGATTACGAGAG 122425 29 100.0 32 ............................. TTTTGGAGCGGTGGAGGTAAAGAAATGACGGA 122486 29 100.0 32 ............................. CGATGACCGACAAGCCCGGCAGCCTGGTGGCG 122547 29 100.0 32 ............................. CGCAACCGTGAACTGCGCTGGATGCCACCTAT 122608 29 100.0 32 ............................. CAGCTACGCCGCTGGGCGCTGGGCGCAGATGA 122669 29 100.0 32 ............................. AAATTGCCAGCGCATTTGATGGCGTTGATCTG 122730 29 100.0 32 ............................. AATTCTCAAAATCAGCTGCCCAGCGGGCGCTT 122791 29 100.0 32 ............................. GGTGCGCCGGTGGTGGTCAGCAACTCGGCCAC 122852 29 100.0 32 ............................. TTGCGCGATGCACTGCAACGGTTGAATGCGCC 122913 29 100.0 32 ............................. TCGCTCAGGGCATCGCCGCCACGGTGTCGGCA 122974 29 100.0 32 ............................. CCAGCGGCGCGGGCATACTTGTCGCTGCATTG 123035 29 100.0 32 ............................. CGCCTCCTTATCCCCGCCCTGCGCCTTGCTCA 123096 29 100.0 32 ............................. CTCCAGCAGAAGGCGATGGAAACCAGCGCCAA 123157 29 100.0 32 ............................. TCGCACCCCTCTTTTTTGTCCTTTGCAATCAG 123218 29 100.0 32 ............................. CCGCCGCTGCTTTGCGGCAGGCGCAGAAACTG 123279 29 100.0 32 ............................. CAAGGAAAACCCATCGCGGGTTATTTCGTAAG 123340 29 100.0 32 ............................. AGGCGTTTGACTCGGAAATGCAAAACAACCCG 123401 29 100.0 32 ............................. CGCTGGGTTATTGGTCAACGCGATGTTGTAAA 123462 29 100.0 32 ............................. CTGCTTAAACACGTCGTTGATTGACGGTTCTG 123523 29 100.0 32 ............................. GGCTGGCTTTGCTGGCCCTTGTGCTATTTGCG 123584 29 100.0 32 ............................. GTTCACTTGTGCCTTGAATGTGACTTTTTTCA 123645 29 100.0 32 ............................. CATTGGTGTTTGCCTGGATGGGCGCCTTGAAT 123706 29 100.0 32 ............................. GCGTGGAACACTGGCCACGCTGGTGGCGTAGC 123767 29 100.0 32 ............................. GCGAATATGCAATTCGCCTCTGCACCGGCTGC 123828 29 100.0 32 ............................. CTCGGACGCCGAGTAAAGCGGCATCCGCGCGA 123889 29 100.0 32 ............................. CTCTGTCTCACGGCGCGCCCGGTGAGCCGCTG 123950 29 100.0 33 ............................. CTCTGTCTCACGCCGCGCGCGGTGTGCCGCTGC 124012 29 100.0 32 ............................. CAATGCAGGCGCTGGGCAGCCGCGCCCACCAA 124073 29 100.0 32 ............................. CCGTGCGGCCGCGCGTGATTTGTCTGGAAAAC 124134 29 100.0 32 ............................. CCTCTCAGAAGCCGATTATGGCCCACTAATCA 124195 29 100.0 33 ............................. AGCGTGTTTGCCGTCATCTGTAAATAGGCTTTT 124257 29 100.0 32 ............................. CTGTCCATCAAGAAAAATAGCCGTCATATTCT 124318 29 100.0 32 ............................. ACGGTATTACTCATATGGACAAACACCAACAG 124379 29 100.0 32 ............................. CGTTGGTGTGGTTCATCAGTTGCATTCCTTAT 124440 29 100.0 32 ............................. TCACAATGTCGTAATGGACTAGGCGCATAAAA 124501 29 100.0 32 ............................. CACACGGATACACCATTTACTATCGTCTACAC 124562 29 100.0 32 ............................. CTGTGCGCCTACGGCGGCATCCAGATCAAAAC 124623 29 100.0 32 ............................. CACGCCAGCGGGCCGGGGGATAATGTCCAGTC 124684 29 100.0 32 ............................. GCAGCTTAGGCTCAGGAACCACCCGGCGCGCG 124745 29 100.0 32 ............................. AGGGCTCCAACTGGGCAATGCTGACTGTCGTA 124806 29 100.0 32 ............................. GCCGGCAGCGAGGTTGTCCAGGTCTGCGCCGG 124867 29 100.0 32 ............................. GCGATTGGCCTGGGCCTGCTCGAGGCCGATCC 124928 29 100.0 32 ............................. GCGTCACGCCGGGAAACGCCAAAACCCTGGCC 124989 29 96.6 32 ............................A GGGCTGGCAGAGCGGGGAGCCGGAATCAAGTC 125050 29 100.0 32 ............................. CTCACCTTGCTTTTGCATTGCTACTCCTTTCT 125111 29 100.0 32 ............................. CGCGCCTGCGCCAGGTCGAGGCGCATGCCGCG 125172 29 100.0 32 ............................. AAAAGGTGGTTATCGCACGCAATCGACTGCGC 125233 29 100.0 32 ............................. CAATTTCGGAAAAGCGGTTTGGCGCCGGCATG 125294 29 100.0 32 ............................. GCAGCTCAGCCGGAAAACCCACGGCAAACCGA 125355 29 100.0 32 ............................. CGTTTTGGCCAAAAGCTGACCATCGGCGCGAC 125416 29 100.0 32 ............................. CAATGCAATCTCATTGCCGCCGCGCCGATCAA 125477 29 100.0 33 ............................. CTCCAGCTCATACCCGCGCCGCTGTTCCCGCTC 125539 29 100.0 32 ............................. CAGGGCGACGCCTGCAAGGACCAGATGCCGGC 125600 29 100.0 32 ............................. AAATCGGTATTCGGCGGCGTTTTCGCTGATCC 125661 29 100.0 32 ............................. ACAATGAAGACCCGGTGGACCCTGGCCGAGAT 125722 29 100.0 34 ............................. GCATTTGAGGGCAATGTGCAAGAAGCATTGCAAA 125785 29 100.0 32 ............................. TGCACTCAGTATAGGGTAGCCTGCGGAAAACC 125846 29 100.0 32 ............................. ACCGGCTTTTGCCCTTGGCGTTTGGCCATGTA 125907 29 100.0 32 ............................. CCGCTTTTTCATGCGGACGCGGGCAGGGTGAG 125968 29 100.0 32 ............................. CGCCATGACAAGGCACTCTCCGAGGTGATCGA 126029 29 100.0 32 ............................. TCGTCGTAGAGCGCCAGCATTGCCAGGCCAGG 126090 29 100.0 32 ............................. TAATCCTTGACAGCTCACCCGCCCGGAGCAGC 126151 29 100.0 32 ............................. AAGACCAAAAACTCCACCGTCTGGCCGCGCTG 126212 29 100.0 33 ............................. AACTACATGGGAAATGGTGCCGGGCTTCCACCG 126274 29 100.0 32 ............................. AGGGGTGTTTGATTGATGGCGAATACATCATG 126335 29 100.0 32 ............................. CAGTTTCTCGCGGCGGCGGCGCTCTTCGTGCC 126396 29 100.0 32 ............................. CGATTTGTCCAGCTACGCTTCGATGATTGTTG 126457 29 100.0 32 ............................. TTTTCTACGGCGGGCGCGGCGGGGCAAAATCC 126518 29 100.0 32 ............................. CCCGAGGCTATTGGCCGCGCGCCGGACGCGCT 126579 29 100.0 32 ............................. GCCCGCAAGGAGGCCGTCAAGCTGGAGCGCAT 126640 29 100.0 32 ............................. CCGGCGCCGGCTGGGGCGGATGTGTGCGCGGC 126701 29 100.0 32 ............................. CCGCCCAACTGCTGGCTTCGCACGACGCCCAC 126762 29 93.1 32 G...........T................ AGCGCGGGCGTGCAAAACTGTACTGGCGCGTG 126823 29 93.1 32 G...........T................ TCAGTTTTGCCGAATCCGCTGAGGCCATCTCG 126884 29 89.7 32 G...........T...............C CCAGCCGATGGGCATCGACTTCGACCTGGCCG 126945 29 93.1 32 G...........T................ TGGAAGGAGGCCGCCCAGAATTTTGATGAGGC 127006 29 93.1 32 G...........T................ CGCTGGAGCATCCGAGTTTTGCCGCTGCTGGA 127067 29 93.1 32 G...........T................ TGGCCGGTGGTATGAGCTACGAGGCCCTTCGC 127128 29 96.6 32 G............................ CACAACACCGGGCGCAAAATCGTCAAAACCAT 127189 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 119 29 99.5 32 CTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GACATCCTCGCCGCCGGGGGCCTGGACGTGCCGCAGATCGAAGGCGTGGTGGACGCCGCCATACCGGAAGAAAAGGGGATAGGCGATGCTGGTCATCGTGCTTGAAAACGCCCCGCCCCGGCTGCGCGGGCGCATGGCCATCTGGCTGCTGGAAATCCGCGCCGGGGTGTACGTGGGCACCTACAACCGCAAAGTGCGCGAATACCTGTGGCATCAGGTGGAAGAAGGCCTGGAAGACGGCAACGCGGTGATGGCCTGGCAAGCCAGCACCGAAGCCGGCTTTGACTTTGTCACCCTGGGCAAAAACCGGCGTATGCCGGTAGAATTCGACGGCGCCCGGCTGGTGTCTTTTCACCCGCCAGACGCTGCGGATCAGGGGTAAAGACACGCTCTTTAACAGGCCGAACTCGGCTGCCTTACCCGCCTGAAAATCGACCGGAAAAGTTGGTAGATTTTGACGTGGGTGAAAAAGCCTTTTGGATCAATGGTGTATTTTTAGT # Right flank : GGTAGTCAAAGCATAACAACATGATTGTTATCGGTATTAATATCAATTAACCCCGCGTCCGGTGCGCAGCCCACCAGTATTTACCCCCACCCCATCTCGCAGCGGCATAAAAAAAGCGGATTTGTCTCACTTACAAGACAAATCCGCTTCTGTCCCCACATTTCAGTATCCGGCCCATTCAAGGGCTTGGGTTCAGCCTTCCAGGCCGCGCGCCAGATCTGCTTGCACGTCGGCGGGGTGTTCCAGGCCAACGGCCACGCGCACCAGGCCTTCGACGATGCCGGCTTTTTCCCGCACTTCCGGCGCTACGCGACCGTGGGTGGTGGTGGCCGGGTGGGTGATGGTGGTTTTCACGTCGCCCAGGTTGGCGGTGATCGACACCAGTTGGGTGGAGTCAATCAGCTTCCAGGCGGCTTCGCGTCCGCCCTTGACGATAAAGCTCACCACCGCGCCGCCGGCGGTTTGCTGGCGCATGGCCAGTTCGTGCTGCGGGTGGCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 393711-393071 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKI01000001.1 Rivicola pingtungensis strain DSM 29661 Ga0244579_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 393710 29 100.0 32 ............................. TGCAATGAAAAGCTGTCCAGACGGATACCCCA 393649 29 100.0 32 ............................. AGAAGATCTTTGCCACTTCATCCGGCAAATCA 393588 29 100.0 32 ............................. GAATAACACCCGGCTGACAGATTGCCCACCGC 393527 29 100.0 32 ............................. CAGACCACGCAGACTCTGACCCACGGCGCGTA 393466 29 100.0 32 ............................. ACGGCGTGGATTTTGAGGCCCTGCGCCTCAAC 393405 29 100.0 32 ............................. CTAGATTTACTACTGGCTCAATCCACTGGCGC 393344 29 100.0 32 ............................. CCGTGGTGGCGATCTGCGTTGTGTTTGTGCCA 393283 29 100.0 32 ............................. CTCATACCCGACCGCCAACGCGGCCAGGCGGA 393222 29 100.0 32 ............................. ATTTGGGCGTTGCCTCTTCCTTCCTCTCCAAC 393161 29 100.0 33 ............................. TGGTTTTCCCGCTGGTGCGCGCCGATGCGCTGC 393099 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTTGCATCCACGGGCGTGTGGAAGACCCG # Left flank : TGAACATCAAAGCCATGACCCGCTCGCCAGCGCCTCAACAAGACCCTGCAACACAACGATATCTGCCTAATCGGTCAAGCGCTAAAGCTCGGTTACATGCCTTGATGTTGAATGTTGCACCGACAAGTCTGAGAAGCAAAATAGAATATAAGGCCAAATGGGGCGGACGCCAGACACAGGCCGTCAATCCCGCGTACACCAGTCAGAAATGCGCACGTTGTGGGCATATCAGTGCAGAAAATCGTAAGAAAACCCGATTTCTGTGTGTCAAGTGTGGGTACATTGAACACGCAGATGTGAATGCCGCCAAAAATATTTTGGCGCATGCTTTCGGCGCATAGCTTAATGCGCTGGTAGGCGGAGCATCCCGCCGAACTTATGCAGGTGGAGGGGCTGTTGTTTTGCTTCTGTGAAACCTGAATCCATAAATCCGTGCATGCTCTCTCTGTAGTTTGGTGCCCTGGAATTTATACCTTGCATATCAACTACTTGCGCTCAGG # Right flank : CACATGAAGTGCTTTAAAGCGGCATCAAATTAGAGGATTCCCCGCGTACGCGGGGGTGAACGGAAGGTAACCGCTTCGGATGCGGCAGCGGTGGGGGATTCCCCGCGTACGCGGGGGTGAATAGCTTTACCTATATAGAGGGCCGCTAATTAAATTACCTTAGCGGCCCTTGGGATTGCCTGCGGCCGCAGGCAATTTCCTGCTACTTCCGGCTACCCTCATGGGCCGAGCCTCGACGTTTTTTCACACCCCCCTGCGCCATCCGCCCGGATGGCGCTATAATCCCCGATTATTTTGCACACACTAGCGAGTGAACGGAGTATCTCATGTCGATGGCTGACCGCGACGGTTTCATCTGGTTTGACGGCAAACTCGTGCCCTGGCGCGAGGCGAACACCCATGTGTTGACCCACACCCTGCACTACGGCATGGGCGTGTTCGAGGGTGTGCGCGCCTACGAAACGGCGCAAGGCCCGGCGATTTTCCGTTTGCAGGATCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCACGGGCGTGTGGAAGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //