Array 1 105580-106477 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDQI01000003.1 Lactiplantibacillus plantarum strain NF92 scaffold3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 105580 36 100.0 30 .................................... GCCGGATTTAATTAAGAAAGTAGCAGGTGG 105646 36 100.0 30 .................................... TACAAGCACTTTACGATTATGAACGCCCTG 105712 36 100.0 30 .................................... TTAGTTTTTCTAACTTCTAACAAATCTTGG 105778 36 100.0 30 .................................... AGAAGAAAGCAACTTTATATGCTTATGTAG 105844 36 100.0 30 .................................... AATTGGAAATGTGAGTGCATCCGCTGCATC 105910 36 100.0 30 .................................... CTGAAAGATTTGGCGCGCGTGATATTATCA 105976 36 100.0 30 .................................... AAACACCGTTAACGGTCTTACCGTGTCGAT 106042 36 100.0 30 .................................... CAGATGATATTACTGGTAATTCTTATCTTA 106108 36 100.0 30 .................................... CTTGCGGGGCGTTTGATGAGCGCGATAAGG 106174 36 100.0 30 .................................... TAAAATTGTTGAAACCGTTGGGACAATCAG 106240 36 100.0 30 .................................... ATTACTCGTGCGGTTAATGAAGAAGTTCCG 106306 36 100.0 30 .................................... GGTATGGAGTACAACAAGGAACAAGACACG 106372 36 100.0 30 .................................... GATGCTGAGGAAACGAAGCATAGAACGTTT 106438 36 83.3 0 ...........CG.C..C.........T..C..... | AA,C,T [106459,106472,106475] ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTGAACCGCCTTTTTCTAAAGAAAGTGCAGACCCAAATTATCAAGTTAATGGCTGATGATCGGCAAGTAGCGGTCTTAGATGAAAATCGTAAAGTAGTTTCGCAAGTAATGGAAGCCAGCTTCTTACTAGACTTACCGCTAGATGTTGACGAATCGCCTAGCCTAGAACAAATATTGAAATTTACCGGTGTTCATTTTCCAACGGAGCTTATGAATGACCCAAGGGCAATACTGGAGGCACTCGTTCAGACGCATGTTGAACTGGGTTTGAAACAGAAGCTGGTGTTGACTAATGTCAGCCATTACTTAAATCAAAAACAATGGGCGAGCTTTGAGCAACTAGTGCATGATTTGGGCGCAACTGTCATTGTTATCGAATACTCAGAAATAAATCGAATGGAAAAGTTCAAAAATAGTTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATGAGTAAATGATGTTAAAATGCTG # Right flank : CTAAAAAATGGCTCACCAACTAAAACAGGTTGGTGAGCCATTTCTATTTATTGACTAATTACTAATCAATCACGCCATCTTTTCCCATCCATCGGAACCGAATAAACTTCCCGACCTCGGTCACAATCAAGACGACGATCCCACAGATAATCGGGATGCCCCAACCATACCAGAAGTTGATGCTAGTCGTATGGAAGACGGATTGCATGAATGGTAGGTAGATGATTCCTAGTTGTAAGAGAATCAGGATACCAATGATGTAGAACGCCATCTTATTTTGGAAGAAGTACTTGGAAATGACGGGGTGGTCATTCCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATGGTACTACCGACGACATTTGGTAATCCAAGTGCGGTCAAGTAGTTGTAGGCGAAGATCCCCAATCCAGAAATTAGGAAGGAGACATAGCCGATTTCAAAATAATCTAATTTTGACAACAACCCAGACTTAACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 505-781 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDQI01000066.1 Lactiplantibacillus plantarum strain NF92 scaffold66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 505 29 100.0 32 ............................. AATTTCTTCTAGTTTTGATAACCAAGGCTCCC 566 29 96.6 32 ............................T ACAATGTCAGCAGTTAATGATGGCAAACCTTA 627 29 100.0 32 ............................. AAGGCCGCAATTATCGCTGGTGGGACTTCTAA 688 29 96.6 32 ............................T AAACATCGACATCTCCGCCAATAGAATCATGT 749 29 86.2 0 ........T.............G....AA | A,CAA [768,771] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTATTCCCCACGTATGTGGGGGTGATCCC # Left flank : CGTTTTGAGCACATTAGTGCTCAAGATTTAACGACGACGTTACTCCAAATTAACCAGCGACCGCTTAAAATACTCGACTGGCAAACACCGTATCAGGTTATGCTGACAAATTTGTCCAAAAATTCGGATTAAATTTGCAATCTACCTTAAAAATTTGAAATTATAATAAGCATAACAAAACTTAAAAACATAAGAGCAAGCAGGTGGATCAAGGCGTGCAACGTTAACCAGTTGTTATGCTATACTGTGAGTGCCCATATGAACAAGGATTCCTATGTCGAGCTATATGACGATATTAAACAACCGCTAGCTTGCGGAGCTAAAGCGGCTATTTTTTATTAGCATGTAGGCACCATTATTTATGAAGACCACTTTTAAATTAAAAGCAGCTCATATTATGTATTATCTGGTGCTCAAATAACTCTTGAATTAGGAATCAAACTCATGTAAAACTGGCATTCACTAATTTATAAATGCTGTTATGACGGGGATCGTTTAGT # Right flank : AATGGGCGCTGGAAACGGATCATGCCAAAAATAATTTCGTTAATCAAGCAAGGCTAAACGGCTTCTCGGGCTGCAAATCCCTGAAAGGGCTGATTAATTGAGAGCGTAAAATATCTTGTGTAAATGCATAAAAGATTTCTGAATTGTATAGAAATAGGGAATGCCTTCCCTTATGATATTTAGTAACCACAGAAAACATCACAGGAGGCATTCCCCATGAATGAACTTACCACAGAAATTATCGCTGCACTAGCCCAAAAGCAAGATTTGGACGAAGTTTTTCGTCACCACCTCGAAATTGCGATTAACCAGCTGCTTCAAACCGAATTGGCAGAGTTTTTGGGTTACGAACGCTACTCATACGCTGGGATTAACACTGGTAATAACCGCAACGGCAGTTATGAGCGCTCGTTTGATACGAAGTACGGCCAACTTAACTTAAGCATTCCTCGAGATCGCAATGGCCGGTTTGAAAATCATACCTTGCCAGCCTACGGTCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //