Array 1 5692-5435 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJZF01000008.1 Thermus tengchongensis strain 15W Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5691 37 100.0 35 ..................................... GTGTTCGAGGACGATGAGGGGCGCCTCTCGGAAAT 5619 37 100.0 37 ..................................... CCCCTTGCGCCGGAGCCAGTCCTGGGCCCAGTCCCGC 5545 37 97.3 37 ................G.................... AGCAGGGTCATGGCTCCTCCAGAGGCGCCGCCCCCAG 5471 37 94.6 0 ................G.................T.. | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GGCTTCTGGCCCGCCACCTGCGGGGGGACCTGCCCGGGTACCCTGCTTTCTGGGTGCGCTAGGGAGGGCCGATGGAACGTCTGGACATATTGGTGGCCTACGATGTGGACACCCTCTCGGAAGAAGGGCGCAGGCGGCTACGGCGCGTGGCCCAGGTGTGCAAGAACTTCGGCCAAAGGGTGCAGCTTTCCCTTTTTGAGTGCCGGGTGACCCGGGCCCAGCTGGAAGACCTCGAGGCCAAGCTCCTGAAGGTGGTGGACCTGGAGAAGGACAGCCTTCGCATCTATGTGCTCCACGGGGGAAGGGAAAGGTCCCTGCGGGCCCACGGCAAGGACCACTACACGGACTTTGATGAGCCCCTGGTCCTATGATGGGCTTTGCGCGGACCCCAAGTGAGCGCCAAAATCCCGGGGGGTTCGCGCAAGGCGGCAAGAGCCGTCGGGGAGCTTGAAAACCTGCATTCCCCTTCATCCTTTGGGCCCTTCGGCGGAGGTCGGCGC # Right flank : CCTTTTTTGTAGTATCCTTCTTCCATGCCCCAGGTAGCCCGGCACCTGACCCTGAGGGAACTGGAGCGCAGGTACAAAAAGGCCAAGGACCCGGTGGAAAAGACCCGCTTCCAAGCCGTCTACCACGCGGCCAAGGGCCTCTCCGCCAAGGAGATCGCCCGCATCACCCTGCAGACTCCCCGTTGGGTACATGCCACCGTGCGCCGGTACAACCTCCTGGGCCCGAAGCCTTGCGGGATGGGCGGCACTCCAACCCCGGAGCCCGGCCCAAGCTCACCCCGGAGGAGACCCTGAGGGTGCTGCAGGCCCTGGAGGGTCCCCCTCCCGACGGGGGCTTGTGGACGGGGCCCAAGCTGCAGCGGTGGGTGGCGGAACATTTGGGAAAGCGGCTTTCCCTCAATCCCATCTACCGCCTACTCCACGAGGCGGGGTTTGCCCTGAGGGTGCCGCGCCCGGTGCACCGGAAGGCGGAGAGGGAGGCGCAGGAGGCGTTCAAAAAA # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 22336-22684 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJZF01000008.1 Thermus tengchongensis strain 15W Scaffold8_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 22336 36 100.0 47 .................................... CAATGGTGGCCCCCCAGGGGGTCCTCCACGTCTTCCTGCTCTTCATA 22419 36 100.0 40 .................................... AAGGCTATCCGGTTAGAGGTTACTCGTAGCGGCCTTCCCG 22495 36 100.0 42 .................................... TTTACCACCCTGGTCCCGTCCGGTAGCTCAAACCAGCGCCCG 22573 36 100.0 40 .................................... CAAACTCCTCCTGGCCGAGCCCATCATCAGCCACATACGC 22649 36 88.9 0 ..............................CA.A.A | ========== ====== ====== ====== ==================================== =============================================== ================== 5 36 97.8 42 GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Left flank : CCAGCCTTTCCCGTTTCATATCGGAAGGATACCGGCCTAGTACGCCCTAGCGCAAGCCCGTGGGGCGGAAGGGGTGGGAAGGGCCTCGAGGCGGCCTTCCCGGGCCGGGAGAGGTACACGCCCTTTTACTTGCGTGGATGGTAGCAACTACCAAAACTTGCCTATGTCCGCTTCTAAGGCATTCTTCAGGCTTTACCAAAACGAAGAGACTATGGCAAAGGCCTCGTTTGGGCATAAAGTGCACTCGGTCTAAGACAGCAGGGTTGTGGTATAATGCCCTCGTCCGGAACCCCGGACGGGCATCTTGAGAGCCAGCTTCCTCCGTCCTGCACGCGAGTATGCGTTTTCCCCCTTTCATCGCCCCCTTCTCCTGTGGCTTCCTAAGGGGGCGAACCCTCAAAAACCCCCGTTATTCACCCCTCGTATATTCCAAGCTTCATGCTTCTCACAAATACCCCCCTCGGGAGCCCGCTCCAGGACGATGTGCAGAGGGGGTACCC # Right flank : AAAACAGGCCCCTCGAGGCCCCTACAAGGGCAACACCAGGGGCCTCTCCCGCCCAAAGTGCAGGAGGAGGACCCCTTCTCCCGACTCCAAGAGGGCCAGCAGAGCCTCCCGCATGCCCAGGAGGAGCTCCCGGTGGGCCTTGGGAAGCCCCGCCAAGGCCCTGTCCAGCCCCTCCGGCCCCTCCTCCCGCCACACGGCCAGGGCCTTCAGGGGGCGCTTCCCCCTCCTGGCCTCCCCGTAGGCCAGGGCCTCCTCCAAAAGGGCCTGGCGGTCCGGTGGGGGCGGGCCCTGGAGGCTGGGGGAGAGCTTGATCTCCACCGCCCCCACCCGTTCCCCCCGCAGGCGGTAGGTGCCGGGGGGAAGGAGGCGGGCGGGGTTGCGCCCTGGGGGAAAGTGCACCAGGAGGGTATGCCCCCGCACCTCCACCCGCACGTGGGTGGCCAGGGTGGGCACCTTGCGGGGAGCCTTCTCCTTGGCCGCAGGCCTGGCGGGAGGCTTCT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGGTTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 36106-35711 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJZF01000008.1 Thermus tengchongensis strain 15W Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36105 29 100.0 32 ............................. GTGAGGTGCAAGCGGTGCGGGCGGCAAATAAC 36044 29 100.0 32 ............................. TGGCCGTAGCCGCTGGAGCCACGGCGGGCTAC 35983 29 100.0 32 ............................. GTGTACTCCCACTCCACGGGGGACACCGACGC 35922 29 100.0 32 ............................. TAGTTGCGGCCCTTCGGCGTGGAAGCGAAGAC 35861 29 100.0 32 ............................. TGACCATGGAACGGCAGTTGTAGTGATTAGGC 35800 29 96.6 32 ............................T CGGTCTCTTCCTGCCCGTCCTCCGCAACATGT 35739 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : CTAGCTTCTCCAAAGCGCTTCCGTACTGCCGGGTGGGAGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAAAGGGCCAAGGCCTCCACAGGGTGGAGGGCAGGCGGGGCCTCCCTCAGGCGGTAGACCCCCCGGGCCACCCGCTCCAGGGGGTAGCCCTGGAGGGCGAGGGCCTCGAGGTCCCGCTCCACCGTGCGGGAGCTTACCCCATAGCGCCGGGCCAGTTCCCCCACGCTGTGGGGCCTCAGCTTCAGCTCCTCCACCAGGTCCAGGAGACGCTCCGCTTTGGATTTTTCCGCCATCTTGTGGGGATTATAACCGGGCATGTGGTACCCTAAGAGCCAAGGGCCTCCTCCTTCCCTTCCTGCTTCCCGGCCCAGCTGGCCTGAGTGCTGGCGTGGAGCTTGACAAGCCAATCCAAGCCACCTCCTTGCTTGGGCTTTTTCCCTTTACAGACCCTTAGAGGGGGGTGAGCGGGGGTTTTTGCCGTCCTGGTCATGT # Right flank : GTAGGATTTCGTCCACCAGACCACGGGCAAATCTGCTACCCTTCAAACTGGCATGGGCACAAAGCAGAACACCCTCCGCTTCGGCACCGAGGGTTTCCGGGGGGTGATTGCCCGGGAGTTCACCTTCGCCACCCTGGGGCGGCTGGGGGAGGCCTACGGGCACCACCTCCTGGAAAGGGGCGGGGGCCGGGTGGCGGTGGGGTACGACGGCCGCTTCCTGGCGGAGGCGTTCGCCCGGGCCCTGGCGGGGCACCTCTCGGGGATGGGCCTTGAGGTCTACCTCCTCCGGGGCCCCGTGCCCACCCCCCTCCTCTCCTTCGCCGTGCGCCACCTGGAGGCGGCGGGCGGGGCCATGCTCACCGCCAGCCACAACCCGCCCCAGTACCTGGGGGTGAAGTTCAAGGACGCCACCGGGGGCCCCATCGGCCCCGAGGAGGCCAAGGCCCTGGAGGCCCGGGTGCCCGAGGAGGCCCCGGAGAGGCAAGGCGCCTACGAGGAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 45984-46928 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJZF01000008.1 Thermus tengchongensis strain 15W Scaffold8_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45984 29 100.0 32 ............................. CTCGCCAAGGCCGACGGGCTCCTGAAGCTGGA 46045 29 100.0 32 ............................. CCCCCTCGGCCCTCCTCCCGGCGGCTGAGAAC 46106 29 100.0 32 ............................. TACCGGGCGGCCACCGCCGTGATGATGCCCGC 46167 29 100.0 32 ............................. CGAACGCTTTGGCATTCCGCTCCCGTGGACAA 46228 29 96.6 32 ............................T TTTCCGGGCCTCGCCGTCCCGGAAGTGGCCTC 46289 29 100.0 31 ............................. GCCCTATACCACCGATCCACTTCCTCCGGGC 46349 29 100.0 32 ............................. CTCCCTGCAGATTTTTGGCCGGGAAGGAACAA 46410 29 100.0 32 ............................. AATTGGATCTGCCGGAAGACGTCCTGCAAGCT 46471 29 100.0 32 ............................. AGGACCAAAACGATCAGAGCCCAGATCCAATC 46532 29 100.0 32 ............................. CGGGAGAACCCCTACGGGGAGCACCTCTGGGC 46593 29 100.0 32 ............................. CTCGTAGACCGGGAGGCGGCCTACGCCCGCCT 46654 29 100.0 33 ............................. GGGCGGGTTTCTGTCGGCCCCTTGTGGGTCGGC 46716 29 100.0 32 ............................. GGGCTGGTCCACCAGGACCGCCCCGTGCACCA 46777 29 100.0 32 ............................. TCTACTTCTACATGGCCGGGGATTTGGATTTC 46838 29 100.0 33 ............................. GGGGACATCCCCCCCTTCCCCTCCTTCACAGGC 46900 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GAAGAGGCCAAGGAGGAGGAAGAAGACCCCACCCGCCCCGGGGGGCTTTGGGACCCGGAGGGCGAGGTGGAAGGGGGCGTGGCCTATGGTGGTGATGGTCCTGGAGAGGGTGCCGAAGAGCTTGAGGGGTGAGCTGACCCGCTGGCTCTTGGAGCTGGACACCGGCGTCTTTGTAGGCCGGGTGAGCGCCGCGGTGCGGGAGCTCCTCTGGGAAAAGGTTGTGGAGAAGGCCGGGGACGGGCGTTGCGCCATGGCCTGGCGCACCAACAACGAGCAGGGCTTCGCCCTGAGGTTGCACGGCTACGAGGACCGGGTCTTGCGGGACTTTGATGGTATAGTGCTGGTGTCGGTGCGCACCGCCGAGGCTTTGCGCAAAGCTGAAAAGCTGAAGCGTATAGCCAAAGCCGTGCGCGGGGATTTTGAAAACCAAACTTCGGAATAGCTCTCTTTACATACCCTTAGAGGGGGGTGAGCGAGGGTTTTTGCCGTCTGGGTCATGT # Right flank : TAGGCCAAAACGAGGGGTTTGGCACCGCCCTGCTCTTGCGGCCTAGAGTGAGCAGCGCCTGCCAAAGCAGGGCGGCATCCCGCTATGAGCGCTTGCGGTAGCGCTGGGCCAGGGTTCTTTCCTCGGAGAAGAGGCGCGTGGCGTAGGCCCGCCCCTCGCGGGCGGCCCGGTCAGAGAGGTGGATGTCAAAGCGCCGGGCAAGTTGGGCCAGCGTCCCGGCGAAGGCTTCCAGGGCCTCCACCAGGGCCTGGGCCCGGGGGTTTTGGGCCAGGGGGTGGCCCTCGAGGCGTTCCTTGAGGTCTAGGGCCTGCTGGCGGAGGGCCTTGGCCTCCTCCTTGTCCTGCGGTTCAGCGGCCAGAAGCCTGGCCCCCGCGGCCAGAAGCTCCTCCAACTCCACCAGGTGCCAATCCGGAGAACCTTTGGGGGCCCTGGGCGGCAGGGGGAAGAGGCGAGAGACCTTCCCGTGGGGGGTTCGCTCCTCCACCTCCAGGGGCACTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //