Array 1 356650-356377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWTL010000017.1 Streptomyces sp. 09ZI22 id=17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 356649 29 96.6 32 .....G....................... CAGCCCCACAATCTGCTGCTCGTGTGCACCGT 356588 29 100.0 32 ............................. GGGGCCAGGGCAGGCGGCGGGGTCACGGGGTG 356527 29 100.0 32 ............................. GAGAACCCCTACCGTCGAGCACGGTTCACGGG 356466 29 93.1 32 .....................T....T.. GACTACGCCTCCTGGATGCGGGTCCCCCGACA 356405 29 79.3 0 ..........TA.C.......C.CG.... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : GAGACGACGGACGTGGGCACGGCAATAGCCGGCGAATTGCAGCTGATGGATCCCGATGTGCGTGCGTCACGGTCACTCGCCGAGCGGCTCCTCGAACCGGAGTTCATCGAGGTCGGGCCTCGGGGCGGCGGTGGACGTATGAGGAGATGCTCGCCGCACTCCCCGAACTGAGCGGCGGGGACTCGGACGGCCCGTGCCACGAGAAATCCAGCATGACCGGTGTCGTACTGGCCCCAGGGGTGGTGCACCTCACCGACGAGAGTGTCCTCGGCGGCAACCGGGCCCGCCGGAGTTCGTTGTGGCGCAGGAAGCATGGTGAGACGGCTTGGCAGATGTACTACCACCAGGCGACGCCTGTCCCGGCGGGTGAGGGGCAGAATCGCTCCTAACGTGCACGGCTTACAGCGAGGACCGTTCGCGGCACGGGGGGAGATAGGTCCGTTTCTCAAGAAGTAAGTAAAAACAGCCCATCGACCGCATAAACCCGCAGGTCACGAACT # Right flank : GCTGCCCGGCGGCCCCGGCGGACCCGGTGCAGCTGGTCCCCACGCGCCCGGTGCCGCCCCCTCACACCCCCGTAGGCGGCGGCACCGCCGCAGCCCGCAGGCCCAGGCGGTCGTGCTGGTCCGTGATCTCCGTCGGGTGGGCGGCAAGCAGGCGGCCCGCTACCGGGAGCGGCATGCGGATCACCACCGGGCGCGGGAGCGTCAGGTCGCGTTCCGCCACCTCCGTACGGGATGCGCGTACCCGGTTCGTCACCCGGGCCACCACCCGTACGTCCAGCGTGAACTGGACCAGCACCGACGTGAACTTCGGCTTGTGCAGGGGCATCGAGCCCGCTCCGTTCGCCGCCGCGCCGCTCGCCGAGCCCGCGCCGTCCACGTTGCCCATCAGCTGGTTGAGGCGGAACTGGTCGGCGTTCAGCACTCCGGCGCCGAACAGGCCGCGTGCCTGTCTGCTCTGCTCGGCCTGGCTCTGGCCCTCCGTCTGGGTGGGGCGGGGCGCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWTL010000003.1 Streptomyces sp. 09ZI22 id=3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1 29 100.0 32 ............................. TGCGACGCCTGTGCCAAGAACAACTGTGGCGG 62 29 100.0 32 ............................. GCCGGTGCACCGGCACGTCTCGAAGGTGCCCT 123 29 96.6 32 ...............A............. CCGCAGGAAGGGGAGACCCCATGACCACGACG 184 29 100.0 32 ............................. TCGCCGTGCTGCCAGTGGTGGCCGGCCAGCTT 245 29 89.7 32 ..A..TT...................... ATCGCGTGCGGCGCCCACAACCGGACCGTGCA 306 29 100.0 35 ............................. CGCTCTCGTCGTCTGTTGTCCGCTTCCGCGGACGG 370 29 89.7 0 ...........AG.A.............. | ========== ====== ====== ====== ============================= =================================== ================== 7 29 96.6 33 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : | # Right flank : CCGGCAGGCGGCCACCGAGACCAACCGCGGACCCGGAGGGTGCGGCTGCTGCTCGATCGGGGGCCCCAGATAGTCGCCTTTCTCGCTGATTGCGCACTCAAGGGGACAGAAGCGAGCGGGAGGTGCCTGGTAGTGGGCGAAATTAGCTCTTCCAACACGGATGGCATAGAGCATCCAGTTGCATCTCTTCTACCAAATGTTCCCTGGAGAGCCAGGGATGACCCCACGGAGGGCATCGCAAGTGCTTGCTCCCTGCGTACGCAGGGATTTTTGACAGCTCAGCCGTTCCTCGATAGTTCGACATCATCAGCAAGCATGCGTAGAAGCACTCTAGGCAGGCATGATGCTGTATGGCTCAGTCGCTGAGATGGACGGAAGCGGAACTTCATGACGAGTGCACCGGACTACAGCCAAGGCGTTGATGCCGAACGCGCATTGAAGTTCGCTGTTCAGCGCATCCGTGGAGATCGTGTCCAAATCATCGAGGGGATCATCGAGCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1952-3692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWTL010000003.1 Streptomyces sp. 09ZI22 id=3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1952 29 100.0 32 ............................. GCGGCCACCGCTTCCTTCGCGTCCCGGTACGC 2013 29 100.0 32 ............................. GGCCGCTGATCGTGCCGTTGTTCAGCACGGGG 2074 29 100.0 32 ............................. CATCGTCCCCCGCGATTGAGCAGTCAACCACA 2135 29 100.0 32 ............................. AGCGGCGGGTGTGCGTGAACGTGCTCTGCGCG 2196 29 100.0 32 ............................. GCCGGGTGGCCCGGATGCTCCTGGAAGCGGCC 2257 29 100.0 32 ............................. TGCCGGTTCTGCCCCTGGCTCAAGCCGGGGTC 2318 29 100.0 32 ............................. GACGAGGGCGATGGCGCACAGGGCGTACCCGA 2379 29 100.0 32 ............................. GGGCGCGGACGGCAAGCCGGGCAAGGCTGAAA 2440 29 100.0 32 ............................. GCACCGTCGGCGATCTCCTCATAGAAACCCCA 2501 29 100.0 32 ............................. CAGGCCGCGATGCAGGGCAAGCCTCTCACCCC 2562 29 100.0 32 ............................. GTTAGCTAACTCGCTGACGAACCGAGCGAGAG 2623 29 100.0 32 ............................. GAAGACGGGCCGATCAGCGCAAGCACCAGCTG 2684 29 100.0 32 ............................. CCGTGCGGTCGGAGGTTTTACGGCGCCGGGCG 2745 29 100.0 32 ............................. GGGCGACGCTCGCTCATCCCGTGATCATCCAC 2806 29 100.0 32 ............................. GCGCGCCCCGTAGAACGAGTGAATGGCTGGAC 2867 29 100.0 32 ............................. AACGAGGACATCGAGCGGGCGGAGCGGTCCGC 2928 29 100.0 32 ............................. GCGCCTGGCTGCACGGGCTCATACTGGGCGGA 2989 29 100.0 32 ............................. AGGCGGCCGAACGCGACACCAAGCCCGGTGAT 3050 29 100.0 31 ............................. GCCCCCGGGCGGCAGTTCCTCGGCCCCTGGG 3110 29 100.0 32 ............................. GACCCGGACGCGGTCTGGGTCCCAGCATCGGA 3171 29 100.0 32 ............................. GATGTCGAGTCCGCTTCCCTCGTCCATGAGAT 3232 29 100.0 32 ............................. AGGCTGAAGGAGGGGTTCACGCCGGCCGCGGT 3293 29 100.0 32 ............................. TGGGCCTGGACGACCTCACCGACACCGACGCG 3354 29 100.0 32 ............................. TCTTGGCGGTGCCGTGTCGATGTTCCTGAGGT 3415 29 100.0 32 ............................. CACCAGTGGGTACGTCCAACCTCTACCGGCTG 3476 29 100.0 32 ............................. CGGGCACGCTGCTCCCGCAACTCAGCGGGCGT 3537 29 100.0 32 ............................. TGGCGGATGCAATGGGCGTGGGCTGTGGGGTG 3598 29 100.0 36 ............................. GGGTTCTTCAACGCTGCACGGGCGGGCGGCCGTCCG 3663 29 79.3 0 ........T.C..G.......G....T.T | C [3673] ========== ====== ====== ====== ============================= ==================================== ================== 29 29 99.3 32 CTGCTCCCCGTGCACGCGGGGATGGTCCC # Left flank : GAAGACTCCTCCCCGCGCACGCGGGAATGGTCCGCACTTCCCGCAGTAGTTGACGAGGTACTCGATCTGCTCCCCGCGCGTGCGGGGATGGTCCCCCGGAGACGCGCGGTCCGGCCTTGGCGAAATGCTGCTCCCCGCGCATGCGGGGATGGTCCCGCCAACCACGTCCTGATCGCGGGCGGGACCGGCTGCTCCTCGCGCGTGCGGGGATGGTCCCTCCCGGTGCTCGAGGACCTCGGCCGGAGAGCTGCTCCCCGCACACGCAGGGATGGTCCCTCACCGGCCTGGTCCGGCTCGTCTTACTGGGCCTGCTCCCCGCGCGTGCGGGATGCCCGAAATCGCCGGCAAGTTCGGTCGCCAAGCTCTCGATTCCCGTGGGCCCAGCGATAGTCTCAATGGGACAGCAGGAAGGCGTGACTGACAGCTTGACCGATATGTCGGATTCGGCGAAAGTGCTTGAGAATCGCGCTTTCCCTCTGTAACGCTGCAGGTCAGGAAGT # Right flank : TTGACAGCGGCTTACCTCGCGCGTGGAGAACACCCGGGGTCCGCTGAGCTGGGCGCTCGTATTCGGGTGCTCTCCGGGCGAGTGGAGGTGATCCGGTGATGCCGTGGAGTCAATGACCCCATAGCGGTGTTGTCCGCGCGGGGCGGCGCCGAGCCGACACCTTGCTGGCCCCGGGCGCCGCGTCAGCGACTTGGGCCGGGTTCCATGCCTACCGGGACGCGGTGCCAACTGCTGCCTCATCATGGGGGCATGCAGCAGCTCGAGGCGCAGGAAGTTTCCCTGCACAAGGTGTTCAGCAGCGACTACGACTTCAGGATTCCGGACTACCAGCGGCCTTACGCGTGGGATGTCGAGCAGGCGGTCCAGTTGCTCACGGATCTGGAGGAATCGCTTGAACGGGGCACGGGCGAGCCGTACTTCCTCGGCTCGGTAGTCCTGGTCAAGGCGAAGGGCGATGCACCGGCAGAGGTTATTGACGGGCAGCAGCGCCTCACTACGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5747-6265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWTL010000003.1 Streptomyces sp. 09ZI22 id=3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5747 30 96.7 31 .............................T CGTCCTCGCGGGCCAGGCGGTTTGCGAGCTT 5808 30 100.0 31 .............................. CCGCCACCGTCGTCGTCGACCCCGACCCGCG 5869 30 100.0 31 .............................. ACGTCGGCCAGTTCATGTCCGTCCTCCTCGA 5930 30 96.7 31 .............................T GGTCCAGGTGCTCCAGCTGCTCGCGCATTGT 5991 30 100.0 31 .............................. GCGGGCGCTGGGTGTACTCGACGTTTTACGC 6052 30 100.0 31 .............................. TCGCGAGGAGGGCGCGCAGCGTCCCCAGGGT 6113 30 96.7 31 .............................T TGCCGAACTTCGTGGCGGCCGGAGTGCTCTT 6174 30 86.7 31 ..........T..AC.G............. GATCGGCGTGTCCCGGGATCGCCGCCCCGTC 6235 30 100.0 0 .............................. | T [6260] ========== ====== ====== ====== ============================== =============================== ================== 9 30 97.4 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : TTCGCCTGGACGAGATGCTTGCCGGAAAGCCCGGAGTCTCGTACGACCACGCGTTGATCACCGTCGAGCACGTATTGCCGCAGAACCCGAAGGCCGGGGCGCGGTGGCTACGTGATTTCACCGAGAAGCAACGCGGGCAGTGGACGCACCGGTTGGGCAACCTCGTTCTGCTGAACCGAACGAAGAACGCCTACGCCCAGAACTACGACTTCACGGAGAAGAAGACCAAGTATTTCACCGGCAGGCACGGCGTCTCAACGTTCGCGCTGACCAGTCAGGTCCTTCAGCATGAGACGTGGGTGCCGGAGCTGCTACAGAAGCGACAATTGCGACTCGTGGGCCTGCTGGCCGATGAATGGGATCTGTAAGAACCGGCGAGACCATGGAAAGCGTTCTTCCTCTGTAGCGAGAGTGTGACTGGCAGCTTGACCGCTATGCCGGATTCGGTGAAAGTGCTTGAGGATCGCGCTCTCCCTCTGTAACGCTGCAGGTCAGGAAGT # Right flank : GCGTCTTCAAGTCTTCGTCTCCGCCGGCGGTGATCAAGCGAAGCCGTCGCTCAGTGGCTTGGGCCCACGGGGCGATGGTCTTGTGTGCCGTCGGGTGTGGTGACTTCCCACTGGAGATCGGTGGTATAGGGCGGGATGAGAAGCTCGATCCACTCGGCGACGGTGTCGAACAAGACGTTCTCGAGGTGCAAGGTAGACCAGGACGCGGGCGGTTCGGGGACTGCCGGTTCCCAGCCGTTGTCGGTCCAGAGGACTTTGAAGAGCTCGCGCTCGTCGCCGATCTGCCGGTCAAGTGCGAAGGAGTCCGCGCCGCTGAACCGTGCCCAGACAGCGAACGTGCCGTGGCTCTCCTGGTCGGGAAACACGCCGATGGTCACCCCGTCCGTGCCTGCCGTAGCGATGTCGCGGATCGCTTCGAGGCGGCGGACCACCGAAGGCGAGCTTGTGTCGAGCACCCGCCTGAGCTCGGCACGATATCGGGCCCCATCCGCATCCTGGTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 6996-7883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWTL010000003.1 Streptomyces sp. 09ZI22 id=3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 6996 29 100.0 32 ............................. ACCCATAGAGGACACCGTGACCCAGCCCGAAA 7057 29 100.0 32 ............................. CCGCCGATCAGCGCCGCGCCCGCCGCCACCAG 7118 29 100.0 32 ............................. GCGGACAGCGTCAGCTTGTGCAGGACCCAATG 7179 29 100.0 32 ............................. GGCGCGGGACTCTGGTCACTCACAGCGTCATC 7240 29 100.0 32 ............................. GAAGGCCTTGGCGGCGTTGCTGATCCTCATGG 7301 29 100.0 32 ............................. CTTCGGCATGTCCATCCCTCTCTAAGTGGTCC 7362 29 100.0 33 ............................. ACGACGGGGTTGCCGGTGACGATCTCGATGAAC 7424 29 100.0 32 ............................. CTCGGCGCCCCAGCCGCTCATCTTGGCCAGGG 7485 29 100.0 32 ............................. TGGTTCGAGGTCGAGGCGTGGGCCCGGACCCT 7546 29 100.0 32 ............................. CCCTTCGCCCGCATCTCGGCCTCGAACGCGCC 7607 29 96.6 32 ........................G.... ACCGCGAACGTCTTCCAGATCGAACTGGTCGG 7668 29 93.1 32 ..........C.............G.... AGGTCGACGGCGACGTAGTTGTCGTGGCGGAA 7729 29 79.3 36 ..........C.TGT.........GC... GAGCTGCGGGACGGCTGGCTCGGCACGGTCCACTGC 7794 29 86.2 32 ..........C..GT.........G.... TCGCCGAACGTGGCGAGCGTGACGCGGCGCGA 7855 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ==================================== ================== 15 29 96.8 32 CTGCTCCCCGTGCACGCGGGGATGATCCC # Left flank : CAGCCGTTGTCGGTCCAGAGGACTTTGAAGAGCTCGCGCTCGTCGCCGATCTGCCGGTCAAGTGCGAAGGAGTCCGCGCCGCTGAACCGTGCCCAGACAGCGAACGTGCCGTGGCTCTCCTGGTCGGGAAACACGCCGATGGTCACCCCGTCCGTGCCTGCCGTAGCGATGTCGCGGATCGCTTCGAGGCGGCGGACCACCGAAGGCGAGCTTGTGTCGAGCACCCGCCTGAGCTCGGCACGATATCGGGCCCCATCCGCATCCTGGTGTTCGTTGGGTTCCACCGTCCCCGTCCCGTGGCCGGACCCGTCGCCCCGGGGATGAACTCAGAAACGCCGCGTACTTATTTCGGCTTCCTCACTGCCCTGGGTGCTCCGGGGATAGTCTCGACGGCACGACATAGTGTGAAGGGCGGAGGCGACAGCGTGGCCGATATGTCGCGTTCGGTGAAAGTGCTTGAGAATCGCGCTTCCCCTCTGTAACGCTGCAGGTCAGGAAGT # Right flank : CGCGAATGCAGCGTCCACGATGGTGCTGACCGTCTGCTCCCTGCGCGTGCGGGATGCCCGGCATCGCCGGCAAGTTCGGTCGCCAAGCCCTCGATTCCCGTGGGCCCAGCGATAGTCTCAATGGGACAGCAGAAAGGCGTGTCTGACAGCTTGATCGATATGTCGGATTCGGTGAAAGTGCTTGAGAATCGCGCTTCCCCTCTGTAACGCTGCAGGTCAGGAAGTCTGCTCCCCGTGCACGCGGGGATGATCCCTACACCTACCTCGGCGCCTACTTCCCGCTGTCCTGCTCCCCGTGCACGCGGGGATGATCCCACCCCCAGGGCGATCGCCAGGCCCCCGACCACCTGCTCCCCGTGCACGCGGGGATAATCCCGTCGACCTGATGGAGCCCGCACAGTGGCTGATCTGCTCCCCGTGCACGCGGGGATGATCCCGAGCGCTACGCCGCGTCCGGGACGATCCCGTACTGCTCCCCGTGCACGCGGGGATGATCCCTC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 8108-8990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWTL010000003.1 Streptomyces sp. 09ZI22 id=3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8108 29 100.0 32 ............................. TACACCTACCTCGGCGCCTACTTCCCGCTGTC 8169 29 100.0 32 ............................. ACCCCCAGGGCGATCGCCAGGCCCCCGACCAC 8230 29 96.6 32 .......................A..... GTCGACCTGATGGAGCCCGCACAGTGGCTGAT 8291 29 100.0 32 ............................. GAGCGCTACGCCGCGTCCGGGACGATCCCGTA 8352 29 100.0 32 ............................. TCTCTTCCGGGCGCCTCCGTGCAGAAGGGGCA 8413 29 100.0 32 ............................. CGATACGGACCACGCCGACCCCCTCCCACCAG 8474 29 100.0 32 ............................. CGCGCGGCAGGCGGACCTCAGTCGTCGTCGCG 8535 29 100.0 32 ............................. TCCCCCGACCCGCTGACGTACGGGATCGTGGA 8596 29 96.6 32 .........................C... CGGAAACCAGGACAGCAGCCGAGACCCGCCGT 8657 29 100.0 32 ............................. AGGATCCGCTTCCCCTTCTTGTACGAGTCGAG 8718 29 89.7 32 ..........C..C..........G.... GCCTCCTCGGCGCCCTCCTCGACCACGTCGTC 8779 29 89.7 32 ..........C..C....A.......... CGCCCCTGGACGCACCTCCCGGTGCAACCCAG 8840 29 100.0 32 ............................. TGCCGCACATCCCCCTTGTACGACGACGGGTT 8901 29 93.1 32 .......T....T................ GCCAACGACTGACCACCCACGGGCCCCGGAAG 8962 29 93.1 0 ..........C.............G.... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.3 32 CTGCTCCCCGTGCACGCGGGGATGATCCC # Left flank : TGCTCCCCGTGCACGCGGGGATGGTCCCACCGCGAACGTCTTCCAGATCGAACTGGTCGGCTGCTCCCCGCGCACGCGGGGATGGTCCCAGGTCGACGGCGACGTAGTTGTCGTGGCGGAACTGCTCCCCGCGTGTGCGGGGATGGCCCCGAGCTGCGGGACGGCTGGCTCGGCACGGTCCACTGCCTGCTCCCCGCGCGTGCGGGGATGGTCCCTCGCCGAACGTGGCGAGCGTGACGCGGCGCGACTGCTCCCCGTGCACGCGGGGATGGTCCCGCGAATGCAGCGTCCACGATGGTGCTGACCGTCTGCTCCCTGCGCGTGCGGGATGCCCGGCATCGCCGGCAAGTTCGGTCGCCAAGCCCTCGATTCCCGTGGGCCCAGCGATAGTCTCAATGGGACAGCAGAAAGGCGTGTCTGACAGCTTGATCGATATGTCGGATTCGGTGAAAGTGCTTGAGAATCGCGCTTCCCCTCTGTAACGCTGCAGGTCAGGAAGT # Right flank : CTTTGAGCCCGTGGTGGCACGACCGCCTCGAGGATGGTGTCGAAGTCGGTGAGGATGCTTCCACCGGCCGCCGGGGCGGCCATGCCGCGCTCGGTCATCATCATGCCGATCGCGCTGCCCAGCCCGAGCGGCTCCCGTCCGTCACGGCGTACAACGGTGGTGGTGCGCCGCTTCGGCTTCTGGCGGGCGGCACCGTTCTTCTTCGCCGCTTCCCTGGCCGCGAGCAGCGCCTGGCGGGCCAGGTCGACACCGGACACCTCGCCGCCGCTCACGACTGCCCACAGGTGGAATAGCCGAGGTTCAGGTGCCCGAGCCCAGAAAGGCGCTGCGCTTCGTTGACCAGGCGGTTGCTGAACAGGCGGCGGGCCGACGGCTCGCCGTAGGAGTCGATGTGGTTGAAGACGACCTGGTGGTCCTTCATCGCCCGCACCCGCCAATCACGCACCTGGTCGGGGGTCAGGTCCTCGAGGACGAGCTCCTGATCGTCCTCGTCAACGATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //