Array 1 452974-452213 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQNO01000001.1 Proteus mirabilis strain GB11 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 452973 29 100.0 32 ............................. AGAATATTTCTCCCTTCTCTTAGCGCTTTACT 452912 29 100.0 32 ............................. TTTTAGTGTTTCTTCTGTATTTAATTTAAAAT 452851 29 100.0 32 ............................. AAATCGCTACAGATGTTATTGAGGGTGAGCAA 452790 29 100.0 32 ............................. CGACAGGACGTTACAGCCCTAACTATACACCA 452729 29 100.0 32 ............................. CTTTATCAAGTGACGCTTGAGCGACTTTTAAT 452668 29 96.6 32 ............................T ATCAGAAAACAATTGATTCATTAACTGCAAGT 452607 29 100.0 32 ............................. CACATCGTCCAATTTCTCAATAGTAAAAAAGT 452546 29 100.0 32 ............................. GATTTAGCCGATTGAATAACGGCTTTCGTCGC 452485 29 100.0 32 ............................. GACAAAAACTTTGCTATCATCACGCCAAAAGA 452424 29 96.6 32 ............C................ CGGTCGCCAGTTGTGAAGGCTACGTATTAGTG 452363 29 96.6 32 ............C................ GCAGTAAACCAATTCATATTATTTGGATCTTT 452302 29 96.6 32 ............C................ TTATCCACGGCTTTAAAAAGTCGAGCAGGATT 452241 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.9 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCCCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTAAATATAATTAGA # Right flank : TCATCAAGTCTTCTCTCTTACTTGGCATTTATGCAGAGATGAATTTTTATATTTATTATCCGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGGTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : GTGTTCCCCGTGCATACGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 462744-461861 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQNO01000001.1 Proteus mirabilis strain GB11 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 462743 29 100.0 32 ............................. GGTGTTCGATTTAGAGCTTGAGGCATCAACAG 462682 29 100.0 32 ............................. GTAAAAAATAATGTGGAAGCCCCTTAAAAATT 462621 29 100.0 32 ............................. CAAGTAAACAAATGTGTGCTATGTTAAACGCA 462560 29 100.0 32 ............................. GGTTATATTCAACTTGAACACTTTTATATAAG 462499 29 100.0 32 ............................. CCAGCCGTAAATAATGTGTAGTAGAATGAGGC 462438 29 100.0 32 ............................. GGGATAGGACTCGAACCCTATGTTCCGATACC 462377 29 100.0 32 ............................. AAACAGGCGCTAGTGATGCAATGCAAGCACTG 462316 29 100.0 32 ............................. ACAAACTGTAGCTCAGGATGTGGTATTAGGAG 462255 29 100.0 32 ............................. TTACTATTAACGCCGTATATTCAAAAAGAATT 462194 29 100.0 32 ............................. GTTTTATCGTATCTGGTGCTACTGCGCAGGAA 462133 29 100.0 32 ............................. TGATTAACCCTATTTATCATCAATTAGGAGAG 462072 29 100.0 32 ............................. GCCAGATTAATCGGTGCGGGTACACCACCTGT 462011 29 96.6 32 T............................ GTGAGTTTTTGGCTCGAAAGATAGCTATGAGA 461950 29 100.0 32 ............................. CCATCAAGTGATTTGAAATGAATTTATTAAAT 461889 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : CCCCAATGCAAAACCTGCGCTTGATTGTCCCGTCGTATTTCCTTATGCGCCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGGGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGTGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATATTACCGACGTTGGTATTACTTATTAGTGGAATTTTAATAAATGCTCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCAAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTAGTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //