Array 1 625220-621411 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDH01000002.1 Shewanella algae strain AC scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 625219 28 100.0 32 ............................ TGCACGGGAATTTCTGGGCGACACAACTGAAA 625159 28 100.0 32 ............................ TATACGATGGCGGCACGCTTGGCGGTGCTTAC 625099 28 100.0 32 ............................ GTCAAGGTAGACACCAGAGTGCCAGCGTCCAT 625039 28 100.0 32 ............................ AACTAACTCGCCAGCGGTAATGCGGTAAATCA 624979 28 100.0 32 ............................ AGCAAGACCTGGCGGCGAGTCAATGTCATATT 624919 28 100.0 32 ............................ AATCGAAATCAGCGATATTGAAACTGGCGAAA 624859 28 100.0 32 ............................ ATTGATAACGGTTTCTTGGGTAGGGCCCTAAT 624799 28 100.0 32 ............................ ATACTGAAACTGCTTGTGGCTCAACTCGTCAT 624739 28 100.0 32 ............................ TTAAAAACAAGCTGGATGAGTTTGACCAGCGA 624679 28 100.0 32 ............................ ACGTAAAAAATCCGGCAACCACATGCTGGTGC 624619 28 100.0 32 ............................ GATCCTTGAATTCAAGGACGGCCAAGCACTGG 624559 28 100.0 32 ............................ TGGTAGTGCGGCCATACTGGCGACAGATGTAA 624499 28 100.0 32 ............................ TTAGACGGCTCGGCACCGTTAACTGTGCGAAC 624439 28 100.0 32 ............................ AGCAAAGGGGCTCAGCTTGGGTTTAGGCTGAG 624379 28 100.0 32 ............................ AACCGTCTCCTTTTCGACCTTCCTCCATGTCT 624319 28 100.0 32 ............................ ACCTGATAAGCCAACTAATGACAACGGTACTC 624259 28 100.0 32 ............................ GATAAAAAAGCTACTCAGACAAACCCCCATTA 624199 28 100.0 32 ............................ TGAATATGATGAAACACCACCTTCAACGATGC 624139 28 100.0 32 ............................ AGATTCAGGTTCTGCTTGAGGATGGTCAGCCA 624079 28 100.0 32 ............................ ACTCGACACTCATGTAAACGTCAGCGGGCTTC 624019 28 100.0 32 ............................ TTTTATTGCCACAGTTGTATCAGATCTTTTTG 623959 28 100.0 32 ............................ CATGAGCTGAATAACTGGCGCGAGTTTGTCCG 623899 28 100.0 32 ............................ TTTCATGGCTAGATGCTTGACTGATGGTAAGC 623839 28 100.0 32 ............................ AATTAAAGGCGCTACAGGTTCCACCACTGGGC 623779 28 100.0 32 ............................ AGAAGGCGATGGCGGTACCGACAAAGCCGGTT 623719 28 100.0 32 ............................ TTCAGGTGCTTGAGGTAGGCGCGGCCGGGCTT 623659 28 100.0 32 ............................ TCGCGTAGTCGCAGCAATGATTAAGTTTGAAA 623599 28 100.0 32 ............................ TACAATTGGCCGCCAGTTTATTGATTGCACGG 623539 28 100.0 33 ............................ CACAGTCGTCTTGACACACGCCGTAAAAATCAC 623478 28 100.0 32 ............................ GAATTTCTTCAGCACCATGCTTGATACGTTAC 623418 28 100.0 32 ............................ AATAAATTGCGCCAATCGAGTTCTATGGTGTA 623358 28 100.0 32 ............................ TCGAGTATTGATGCTACCAGATAGCAAAGAAC 623298 28 100.0 32 ............................ ATTTATTCCACCGGCGTCTAGTGATAATATTT 623238 28 100.0 32 ............................ TGAAGACATGGCATCTAAGATCATCGACAACA 623178 28 100.0 32 ............................ TCGGTGCCGCCTGCCTGCTGCAAGGCAGCAAT 623118 28 100.0 32 ............................ GTAAAGGTGCGTCGTATTGCGGACAGTATAAC 623058 28 100.0 32 ............................ ATCAGCAGATATCTTTACGTATCTGTCAGTGG 622998 28 100.0 32 ............................ TTGAACGTGCGGGTTCTGCTGCAACTAAGCGC 622938 28 100.0 32 ............................ AGCCGTCCAATGTCGGCCACCTATCCGAACAT 622878 28 100.0 32 ............................ GTGACGGAGAGATATGTTTTAATGGTGGTGAT 622818 28 100.0 32 ............................ AAGCCGGAACTTGAGACCGGGCAATATCACTT 622758 28 100.0 32 ............................ AGAGTGCTGGCGTCTGCCCAATAGGTGCCCTC 622698 28 100.0 32 ............................ CAGTGGGAAGCGTCCCGAAGCGTGGCGTTTGC 622638 28 100.0 32 ............................ TTACAACGAAAAGAGTGTGACGGCCGGCTTTC 622578 28 100.0 32 ............................ TATACGGGCCCAGCGTTGCCGGTTCATTCGGT 622518 28 100.0 32 ............................ TTGCCATGCTGATACCGTTAAATGAACTGGAA 622458 28 100.0 32 ............................ AAACGATCGGGACATGGGAAGCGTCGCGGGGA 622398 28 100.0 32 ............................ ACCACCGGTCAACAGATACGCGTGTTCCCACG 622338 28 100.0 32 ............................ AGCAGACTGTTCATGTCCGCGACGATTTCTTC 622278 28 100.0 32 ............................ TTGTTGACCAGTTGACGGTCAGCGACCATACC 622218 28 100.0 32 ............................ TCCATCACTGTTCCGTGATAGTGCCCCTGAGA 622158 28 100.0 31 ............................ GCCGATAAAAGAAGAGGCAGATGCAAAAGCA 622099 28 100.0 32 ............................ TTACTTCGGCCTAACATCATCTCTTGGTGACA 622039 28 100.0 32 ............................ TTTGGTATGGCCTTGGTTCGCGGCCTCCGTGA 621979 28 100.0 32 ............................ CTGCTGAGAAGTGTGATGAACAAGGCGTCTGT 621919 28 100.0 32 ............................ GATAGAAAGTTGGTTTAGATAGCATTGACTGG 621859 28 100.0 32 ............................ TCTAATGTTTGGACGTTCTTTGTTGAGTACGT 621799 28 100.0 32 ............................ ACATCCGGCGGGGTTTCTGCGTCACACTCAGC 621739 28 100.0 32 ............................ TGACCAAGCCAAAGCCGCAAGGCGAGGGGGCA 621679 28 100.0 32 ............................ CGTCTGCAGCGGTACCGGCAAGCGCCAGGTAA 621619 28 100.0 32 ............................ TATCAGCCACTCCAAAAGTGTTGATTTCGGCG 621559 28 100.0 33 ............................ CACAGTCGTCTTGACACACGCCGTAAAAATCAC 621498 28 100.0 32 ............................ GCTTCGCCAGGTGGTGTTTATGCTGCCATCTG 621438 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 64 28 100.0 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTGTTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACATTCTTTTATTGCTTTATTCTATT # Right flank : GTTCTTCTGGTGAATTGCACTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTAAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGCCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCAGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTCGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //