Array 1 249600-248106 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETP01000017.1 Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258 isolate FDA_2010_225_Clinical-OH-1 SEEM5258_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249599 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 249538 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 249477 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 249416 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 249355 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 249294 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 249233 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 249172 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 249111 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 249050 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 248989 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 248928 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 248867 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 248806 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 248745 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 248684 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 248623 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 248562 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 248501 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 248440 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 248379 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 248318 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 248257 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 248196 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 248135 29 93.1 0 A...........T................ | A [248108] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266801-265735 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETP01000017.1 Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258 isolate FDA_2010_225_Clinical-OH-1 SEEM5258_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 266800 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 266739 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 266678 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 266617 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 266556 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 266495 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 266434 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 266373 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 266312 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 266250 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 266189 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 266128 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 266067 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 266006 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 265945 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 265884 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 265823 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 265762 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //