Array 1 280083-280782 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAV01000087.1 Escherichia coli strain A85 NODE_4_length_345999_cov_60.1255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 280083 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 280144 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 280205 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 280266 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 280327 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 280388 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 280449 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 280510 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 280571 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 280632 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 280693 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 280754 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 306482-307791 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAV01000087.1 Escherichia coli strain A85 NODE_4_length_345999_cov_60.1255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 306482 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 306543 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 306604 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 306665 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 306726 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 306787 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 306848 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 306909 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 306970 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 307031 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 307092 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 307153 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 307214 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 307275 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 307336 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 307397 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 307458 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 307519 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 307580 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 307641 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 307702 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 307763 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //