Array 1 1451-2081 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBR01000062.1 Enterococcus faecalis strain CVM N52469 N52469_S3_L001_R1_001_contig_62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1451 37 97.3 29 ....................................G GTAAAAAGATGGCTTCCTCTAAAGTTCAT 1517 37 100.0 29 ..................................... TATGGCAAAGGGATCAGCATTTCAGAAGT 1583 37 97.3 29 ....................................G ATTGATCCAGGTTTGCCTCAACACCAAAC 1649 37 94.6 29 ....G...............................G ATTGATCCAGGTTTGCCTCAACACCAAAC 1715 37 97.3 29 ....................................C ATCAAATTGAACAAAGTTCATCATGGACA 1781 37 97.3 29 ....................................A CAAACAATCACAAGCGAAGTACGCGTAAC 1847 37 97.3 29 ....................................C AATTTAAATTAGCGTATATGATGATTAGC 1913 37 100.0 29 ..................................... GGTGAAGATGTTGATTCTGGATTATCAAA 1979 37 100.0 29 ..................................... GGGTTGACTAAAGAGCCGTCAAAAGTTTT 2045 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.1 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTATCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : TCAAGAAATTGCATTAAGTTCAAAAAATTTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTTATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 14544-14778 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBR01000007.1 Enterococcus faecalis strain CVM N52469 N52469_S3_L001_R1_001_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 14544 37 97.3 29 ....................................G GTGGTGGCACTGGTTTTACCGGATCTTCG 14610 37 100.0 29 ..................................... TTTTGACACGGAAGGGCTTCAAAAATTTT 14676 37 100.0 29 ..................................... AATCCTGTCACAATCGCCGTTGCAAAGGC 14742 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 98.7 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACC # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAATTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCTTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : AAAGAAACAAGACTTCACGCCAAACTCAGTGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATATGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAATTAATAAATTGAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTTAAGTTAACCACATTGAAAGATAGACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTTCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 679-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUBR01000162.1 Enterococcus faecalis strain CVM N52469 N52469_S3_L001_R1_001_contig_162, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 678 36 100.0 30 .................................... AGAAGCAGCCGCGAAAAATTAATACACGCG 612 36 100.0 31 .................................... TACAGTTCAGCCAGGAAACACGTATTGGGGG 545 36 100.0 30 .................................... ATGCAATTAATCTCAATCAATCCAACCAAA 479 36 100.0 30 .................................... TCTGCTGTTGTTGATTCATTAACTTTACTA 413 36 100.0 30 .................................... TGTTTCTGGTTATCGATTAAATTATTCATC 347 36 100.0 30 .................................... CTGATGACGATACGGTTGTTAACCAAGCAA 281 36 100.0 30 .................................... CCGCCTGTCTTAAATATTCATCTTTTGCCG 215 36 100.0 30 .................................... CTTCCGCGGCGTATCCATATTCAGTAGCAC 149 36 100.0 30 .................................... CAATCAAAAGTTTTTTGTTTAAATCTCTCT 83 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC # Left flank : GCGCCAGATTGGACTTGACTCAGACCTGTTCCGCTTCCGCCACCTTGGACATTAATAAATCTTCCCGGATTTTGGCTTTGATATTCCTCACTCGCTGTCTCTACTAATGGTTGTAAAGCTGATGAGCCTACCGCTGTGATGGATTCACCACGATCAATCCATTTTGCACATCCTGTCAAAGTAAGTATACTTGCCAAACCAATAAATAATAGCAATCTTTTTTTCATCGATTCATTATTCCTCCAATTAATTTCAATCTATTCTATTTTACCATTATATGTAGGACTTGAAAATTATAAGTTATCAATTTGTTGGTACAACTGAGAAAACTCTTAAATTAAATAACAAAAAGTATCTGAAAAAGCCAATTTGGCTGTTGCTTCAGATACAAATAATTATGCTAGAAAGATGACTATATTTAAACATTTAGTGGGGATGGCTTTTTTGAAAATTATTTGGGGTATAAAAGCGAGTTCGTACATCCAACCTACTTCCTTATT # Right flank : CCAGTCACTTAAAAGCGAAACGGAACAAGCTGTTTTACTGATAAGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //