Array 1 121407-121896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHG010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-032 tig00000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 121407 26 100.0 41 .......................... ATTAAATCCCATTGAAAAGATAAAAATAATGATAAGTCTCG 121474 26 100.0 41 .......................... ACGGATAAAATCGAGAAGTTTAGTCAATCCTTCACGTCTCG 121541 26 100.0 40 .......................... AAAGTATCTACACCCAACGCCTTAACATCATCTGGTCTCG 121607 26 100.0 42 .......................... TAGGATTGTGCCTTTTTTTATCAAGGGGCGATACTCGTCTCG 121675 26 100.0 40 .......................... TGTCAAGTCATAGCCACGGTTACTTGGCACTACCGTCTCG 121741 26 100.0 39 .......................... ATTATTGTTGTAGACTGTGACACCTTTTGTTTTGTCTCG 121806 26 100.0 39 .......................... TCCTCAATAATTTGGATAAGTAGCTCCGCATAGGTCTCG 121871 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================== ================== 8 26 100.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAACTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAATGGGTGATTGAGATGAGGCAAGGCGTCTTGACTTAACCCAAAGAAGAGCTCCGCTTTCTTCTCCTGCAAGTGAAAAAGAAGTCATTGGTACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 226420-225196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHG010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-032 tig00000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 226419 36 100.0 30 .................................... TATATGGGCTGATTATTTATATAAGGGCCA 226353 36 100.0 30 .................................... CACAGCGCTTGTCGATCAGGCCGAAATTTA 226287 36 100.0 30 .................................... CGGCGACGGAACCGAAGAAACAACAGTGGT 226221 36 100.0 30 .................................... TAGATTTTGATGTAAGTATCTTCTGCTGGC 226155 36 100.0 30 .................................... AAACTTAATAGTATCGAGAATATGCGATCA 226089 36 100.0 30 .................................... CCAGATAGCTCTGAATATACCACGAATTGC 226023 36 100.0 30 .................................... ATATTTTTCTGATTTCGGCAGGTGTCAGAT 225957 36 100.0 30 .................................... TTTTTGATTATCAAATAAAAAACAACACCA 225891 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 225825 36 100.0 30 .................................... TAACATATTATCAAATTAAAAGTGCAAATT 225759 36 100.0 30 .................................... CCACGAATGCTTTAGCCGAAAAATATGCTC 225693 36 100.0 30 .................................... TAACTGTTGCGATTGGTGTCATGAAGTTGT 225627 36 100.0 30 .................................... GCACCTTTAGCCAACCTGAACCACCAGTTC 225561 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 225495 36 100.0 30 .................................... TCGTTTCACATTCAAGTAAGTGTGCCCGAT 225429 36 97.2 30 ..................T................. GGTTACTTGTTAGGGTGAGTGGATAGATCT 225363 36 97.2 30 ..................T................. GCAACTATTGTTTATTATTTAGTAATCCAT 225297 36 97.2 30 ..................T................. AGATGAGACGTGTAATGAATGGTTTGAACA 225231 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 98.8 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTAATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGAGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAAAGGGGGTTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGATAAGATACGCTTGGTGTGGTAGTTGTTGAGGAACTTCCCCTTACTTTTATCTCCTTATCTTACTATTTGCAGAAAAGTATTATAGAACGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAATGTTACGCAGCTTAACTAACTTTTTGATTGTGGCCCTGCGCTTGCCATTTTCTACCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //