Array 1 224355-222617 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMOX01000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain SL_11_62 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 224354 29 100.0 32 ............................. TGTACAGTGTCAGTTATTACCTGACACATGTC 224293 29 100.0 32 ............................. CTGCATAATTGGCCTGGCAAGGTCAGTGAAAG 224232 29 100.0 32 ............................. TAAGAGGCGGTATCATTTTTGTCTTCGGGCGG 224171 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 224110 29 100.0 32 ............................. GCCGTTGATAAAAAAACGGGCGAACTGGACAA 224049 29 100.0 32 ............................. AAGAACGTTTGCAACTCCCTGGTGAAGCGGTG 223988 29 100.0 32 ............................. TTTTTTGCGTCCCTGCCTCCGGATGAACAGGA 223927 29 100.0 32 ............................. ACCTCAATAAAAATTTACACCGCCACACCGGC 223866 29 100.0 32 ............................. GCGATGCTCAGGATTCAGAATCTGAACGTCCA 223805 29 100.0 32 ............................. ACGCTGAACCTGAAAAGCACGTTGCCGGGCGA 223744 29 100.0 32 ............................. GATGGACACCACAACTACGCGGCGGCAAAACT 223683 29 100.0 32 ............................. ATCGGGGAGGTTGTGCAAGGGATTTTATCGTG 223622 29 100.0 32 ............................. TCAGCAAAAAAGACCTGTTTGCCGATATGGGG 223561 29 100.0 32 ............................. AACCGGAGGGGGTTCCTGCCGGGTACGCATAA 223500 29 100.0 32 ............................. CAGCCCCTCTAAAATTGTTGCCCGCCACGTAA 223439 29 100.0 32 ............................. AAAACCAGCGATAACGGGCGGGCGTTTATACG 223378 29 100.0 32 ............................. CGACGCCCGATTCCTGTTGCCAGCGCCCCGCA 223317 29 100.0 32 ............................. GCCGCTATCACCAACGACCCGGGCGTTGTTGG 223256 29 100.0 32 ............................. TTCCGTCGTGTAGCCCGCTGGTTTGGGTCGGA 223195 29 100.0 32 ............................. TTGTTATCCCGCCTGTGGTTTAATCGCGAGTG 223134 29 100.0 32 ............................. CCGGGTGCATCATGCAAAATCCTATAAGGAAA 223073 29 100.0 32 ............................. AATTGTCAGTGTAATTGCGCATATCGTTCGTT 223012 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 222951 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 222890 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 222829 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 222768 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 222707 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 222646 29 96.6 0 ............T................ | A [222619] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCTGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235266-234018 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMOX01000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain SL_11_62 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235265 29 100.0 32 ............................. TCGTCCGAACGTACCCTGGCTGTCCAGGCCGC 235204 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 235143 29 100.0 32 ............................. TTTATATCCAGTTTTCGGCAGAAGCGCCGCAA 235082 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 235021 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 234960 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 234899 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 234838 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 234777 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 234716 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAAACC 234655 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 234594 29 100.0 32 ............................. CAGCGCAGACTACTGGCGCTGACGGCTCGTAC 234533 29 100.0 32 ............................. CCTCCGGAAGAGCGGAATCCGACATAATTATT 234472 29 100.0 32 ............................. ACTCGCTTATGCATAGTGACAATTGGGCAACC 234411 29 100.0 32 ............................. TTGAAAGAGCAATTAGCGCCGCTGGCATCAAG 234350 29 100.0 32 ............................. GCGCCGCGCAGTTCGTGGACGCGAAACGGATT 234289 29 100.0 32 ............................. CTACACATGCACCGGGTATCCGTGAGCATGAT 234228 29 100.0 32 ............................. GCGGGCATGTAAATAGCAGGTCAGCAGATACG 234167 29 100.0 32 ............................. ACACAAATGCAGTTAGCTAATCGTGCATGGCG 234106 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 234045 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //