Array 1 36373-38140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLSP010000041.1 Pseudomonas aeruginosa strain S5 NODE_41_length_48615_cov_141.119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36373 28 100.0 32 ............................ TCGGCGCAATGCCCGGCATGCTCAACCTGGCC 36433 28 100.0 32 ............................ ATCAGCCTCTGGCCGGAGGATCAGCAGGCGGA 36493 28 100.0 32 ............................ GAAGAGCAGAGGCAGGAATGCCTAGCTCTAAA 36553 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 36613 28 100.0 32 ............................ TGGTGGCTGGCGATGTGATCCGATTGGCCAAT 36673 28 100.0 32 ............................ AACAAGGTTTCTTCTGGCCAGGGGCTGTACCC 36733 28 100.0 32 ............................ GAATGACGCAACCGAAGCGGCAGCAGCGGCTG 36793 28 100.0 32 ............................ TTCGAACTCCTGCGCATGGAAGGCCTGCGCAC 36853 28 100.0 32 ............................ TGAGTGCTCACGGGAGGCTGAGGCCGAAAAGC 36913 28 100.0 32 ............................ TACAGCGTGATATCCAGATCATCAACGACACG 36973 28 100.0 32 ............................ TATGACCGGAGGCTGTCTTTGTCCGAGGTGGT 37033 28 100.0 32 ............................ ATGACCGGAGGCTGTCTTTGTCCGAGGTGGTT 37093 28 100.0 32 ............................ ATTACCGTTGCCATCGCCGCCACCGTCGCCGC 37153 28 100.0 32 ............................ TTGCGCAGGCGGTGCTGGGGCTCGCGAAGCTC 37213 28 100.0 32 ............................ TTGCTCAGCGGGAGAGATTTCCCCGTTGGATA 37273 28 100.0 32 ............................ AGGCTGCCAAGTCGGTGCGCGAGGCCGGCTTT 37333 28 100.0 32 ............................ TCATAGGGCTGCGGCAGGTTGACCACGTCGCT 37393 28 100.0 32 ............................ TTGAGGCGTGAGCGACTTCAGGAATGCGCTCT 37453 28 100.0 32 ............................ ACGACGGCCGCCTTGCGGATCTCGGCAGCGGA 37513 28 100.0 32 ............................ TCCTGGTCGTCCTGCGCTCGTACGGCCATGGC 37573 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 37633 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 37693 28 100.0 32 ............................ TCTGGCGAAGAGCGGGATGACAAGGGCAGAGC 37753 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 37813 28 100.0 32 ............................ ATCTACTGCCGCACAACAGGCCAGCGCATCGG 37873 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 37933 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 37993 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 38053 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38113 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47703-47015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLSP010000041.1 Pseudomonas aeruginosa strain S5 NODE_41_length_48615_cov_141.119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47702 28 100.0 32 ............................ ATGCGCTCCAGCACCAGGTCATTGGCGTGATC 47642 28 100.0 32 ............................ CTTGGTGCAGGCGTCGCGCAGGGCATCAACCA 47582 28 100.0 32 ............................ TGGGAAACGGCAGTGTCGATCTGCGCCGGCGT 47522 28 100.0 32 ............................ TCCCTATGCAGGAAAAGATCAAACGGTTTGTC 47462 28 100.0 32 ............................ AGTCCGGATACTTGGCGCCCACCAGTTCGAGT 47402 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 47342 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 47282 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 47222 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 47162 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 47102 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 47042 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46487-47912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLSP010000029.1 Pseudomonas aeruginosa strain S5 NODE_29_length_89734_cov_203.57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46487 30 100.0 37 .............................. CGGTAGTAGGTGTTGTTGCTGGGCGGCCAGGGAAGGT 46554 30 100.0 37 .............................. TCGTCGGCGTACTGCTGCGCGATCTCGAAGAAGCTGT 46621 30 100.0 37 .............................. GGCTACTACGCCCCAGGCGAAAGCCGATTCGCCATGT 46688 30 100.0 38 .............................. CATCAGAATCATCGTGAAGCGCTTGGCGCCTACGATGT 46756 30 100.0 35 .............................. ATTTCAGTCGCCTCTGAAGTGGGAGCCGCCGGCGT 46821 30 100.0 37 .............................. TTCCGGGATCAGGGCGGCCTGACCCAGGACTGGGGGT 46888 30 100.0 36 .............................. ACAGGCCTTGCATTCGCTGCAATGGCCGTCCTTCGT 46954 30 100.0 37 .............................. CGCACTGAGCAGGCCAACCAGCGCGCTGAGCGTAAGT 47021 30 100.0 38 .............................. TCCACGCCGAGGAACCCAACGAATCCGCCCGCGAAGGT 47089 30 100.0 38 .............................. TGGAGTAACCAGGTGCCGGTCTCCGGAACAGCATCAGT 47157 30 100.0 35 .............................. AGCAGCTCAGGTGCAGCTTTCACGAGGTAACCAGT 47222 30 100.0 37 .............................. AACAACGGTACCGCGTCGCCGATCAATGTGAAGATGT 47289 30 96.7 36 ..................A........... ATGAACGGGACTCCTGTAGCTGTTGTATGGCCTCGT 47355 30 100.0 37 .............................. TTCGATAGCACCTATTCAGCTGTAGACGTTGAGAAGT 47422 30 100.0 38 .............................. GCCAAGCTGTGCTTCGAACACCTGGGTATCAAAGTCGT 47490 30 100.0 36 .............................. ACTGAACAGGAGAACGCCAACATGGCACCGAAGAGT 47556 30 100.0 35 .............................. ACATGCGCCAGCACAGCACCGACCGATTGAGGTGT 47621 30 100.0 36 .............................. TACAGCGATCGTGGCCAGCTGCTGGACGAGTCCAGT 47687 30 100.0 36 .............................. GGCGCAAAATGGACGGCTGTGCGTGTCGGGAAACGT 47753 30 96.7 35 ...C.......................... CCTACCGATGAGGTCACCCTCGAACGCGCTCTGGT 47818 30 100.0 35 .............................. CGCATCAACGGCAGCGCGTACCCAACGAAGGTCGT 47883 30 90.0 0 .......................GC....G | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.2 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATCTATATACTCTTTCTTTGAAGTTAGGAGCTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GACAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAACAACTCTTGTGTCACGGTGTCACGGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //