Array 1 49018-46430 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFML01000079.1 Streptomyces roseus strain ATCC 31245 contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================================== ================== 49017 28 100.0 33 ............................ GGGGCAGGCCGGTTCCGGCTCCACGACCGTGGC 48956 27 96.4 33 ....-....................... GGCCACCCGTTCCCTGAGGATGCGGCCCGCGTA 48896 28 100.0 33 ............................ GGCGTACGGCATCCGCGGCTTCGTCCGGGCCTG 48835 28 100.0 33 ............................ GCCGGAGACCGTGGGTACCGATTTCATCCTCTT 48774 28 100.0 34 ............................ GACGCCCCACACCGCGGCGAGCACCGCATCCGTG 48712 28 96.4 33 .......................T.... GTTGAGTAGCGGCGTCAGCGCCGGGAGCAGCTG 48651 28 100.0 33 ............................ GTTGGCCGAGGACGGCCAGGACGGCCGCCTGTT 48590 28 100.0 33 ............................ CCCGCACCTCGGCGCCACCGCCAAGGTCGGCGC 48529 28 100.0 33 ............................ GGAGCGCGCGGAGAAGGAGGCGGCCCAGCGCGG 48468 28 100.0 33 ............................ GACTCGAAGGTCACGCAGCTGCACTTCGGCCTG 48407 28 100.0 33 ............................ GACGACCAGCAGGCGGCCGCGATAGAGGAGCAG 48346 28 100.0 33 ............................ GGTCCGCAACACCTACGACTGCACCGCGTCCAC 48285 27 96.4 33 ..............-............. GAGAGGTGAACATGTCCATCCACGTTTCCCCGG 48225 28 100.0 33 ............................ GTAGCGCACCGCGTCGGCCGCTGCCGGGCTCGG 48164 28 100.0 33 ............................ GGCGTGACGGCCCAGGACGGCCAGCTCGTCGCG 48103 28 100.0 33 ............................ GCACCTATGAGGGTGACCTTCGCCTACCCGCTG 48042 28 100.0 33 ............................ GGGGGCTCTGTGACTGGCACGGACGCCTACGGG 47981 28 100.0 33 ............................ GCTGGTGGAGGCTGACCCGGGCGCGACCGAGTA 47920 28 100.0 33 ............................ GGCCAGCGATGATCTCCCTGCCGGCGTCGTACC C [47916] 47858 28 100.0 33 ............................ GGCCTACTCGCCTGGACTGGCGACCCGAACGAC 47797 28 100.0 33 ............................ GCAGTGGGCGGGGTGCCAGGGGCTGACGAGCCA 47736 28 100.0 33 ............................ GCCGCCGAGGAACACCTCGACGCCATCCGCCCC 47675 28 100.0 33 ............................ GGGGCAGGCCGCACCGGGTGACGGGAAGGCCGT 47614 28 100.0 33 ............................ GGCGGCGGCGGACGCGACAAGGGGCGCGGTGAT 47553 28 100.0 33 ............................ GAGCGTACCAACCGCCATGCTGCCTTTCCGAAG 47492 28 100.0 33 ............................ GCGGTGGCGGGCGGCGTCCGGCTGCCAGGCAGG 47431 28 100.0 33 ............................ GCCCTCGTTCAGTGGCATGGTGGACTGACGGGT 47370 28 100.0 33 ............................ TTGGTAGTGGCAGCGGCGGGCGGTTGCCTGGTG 47309 28 100.0 33 ............................ GGAGATCGCCTGATGCCGTTCCAGCGCACGACT 47248 28 100.0 33 ............................ GTCTGATTCGGACATAGGGGACTGGCTACGCCT 47187 28 100.0 33 ............................ GTGCGTATGGCCCGACAGTCGGTGTTGTCGCGA 47126 28 100.0 33 ............................ GCGAGATCACCTATGTGCCGGACATCGATGATG 47065 28 100.0 33 ............................ TTCTGATTCCGTCGCGAGCAGCGCGGCGAGTAG 47004 28 100.0 33 ............................ GCGCACCCCGCAGTCGAGGGTGAGGGCGGTGAA 46943 28 100.0 33 ............................ GTTGCTTCGCTGCCAGAAGACACCCGACGGGGT G [46926] 46881 28 96.4 33 ........T................... GCAGTGCTCGGTCACCTCGCTGAACGCCGAGTC 46820 28 82.1 33 ..G.A.......T..........A..G. GGAGGTGTTGGAGGAGGAGCGCCCCAAGGAGCC 46759 28 82.1 30 .....T.G......TA...T........ GTCGTACAGTGTGGTCACCTTGTAGGTGCC 46701 28 78.6 33 .GA..............AA....G.C.. GCTCATCGAGGCCGCGATCCAGATTGGCCTCAC G [46695] 46639 28 96.4 154 ..............G............. GGCTGTCCACATGGGGTTTCTACTACGGCCAGCCCCCGTTTCCCTTCGTCCCGACCTGGTCGACATGGTGCTGGCGGTCGGCGACGGTGTCGGCTCCGGCTTGCTGGGCCGGCGGGTGGCCGCCTTGGCGTAGACCGGGGGGTGGGCGAGCCAC 46457 27 71.4 0 .......T......G-...T.G.G..GG | A [46446] ========== ====== ====== ====== ============================ ========================================================================================================================================================== ================== 41 28 97.5 36 GTCGCCCCCGCGCCCGCGGGGATCGTCC # Left flank : CCCGAAGGGACAGAGTTCGAGGACTCCGAAGCGAACCTCTTGTGGGACGAACACCTCGGCGCCGTCCCCGGAGGAACCAACTACGCCAGTCACGCAGACCTCTCAGCACACGGAATGACCGACAACCACATCGCCGTCATCGGTCCTGAGATGGACGAGGCCGCGCCGACACCATGACCGTCATCATCCTCGTCGCAGCCCCAGAAGGCCTCCGCGGACACCTCACACGCTGGATGGTCGAGGCCAGCGCCGGAGTATTCGTGGGCAACCCCAGCCGCCGCATCCGCGACCGGTTATGGGAACTACTGGCCACCCGAATCGGCGACGGCCAAGCCATCCTCATCGAACCAGCCGCGAACGAACAAGGCTGGGCCGTCCGCACCGCAGGCCGCGACCGGTGGCAGCCCGTCGACTTCGACGGCCTGATCCTTTCCGCCCGCCCCCAAAAACAACCAAACGAAAACAACCACTCAGCCCGATAAAGCCACAGCTCAGGAAGT # Right flank : GGTACCCGAAGGCGTTGGCTCGGCCGTCGGGTGTTCGACGGCGCCGCCGGTGGGAGTTGGTCAGGATTCGGCGGTCTGCCCGGGGTGTGGCTTCGGGGCTTGGCGGTGGGCGTCGTGCAGGTGGTGGCGCAGCTCGTGCAGGGTGTGCACGGCGACCCAGCGTACGGTTCGCTCGGTGGGTTGGGGGTAGCTGTAGATAAGGGTGCGGTCCCAGTGGTCGGGCGGCAGGCGGTCCAGGACGTTGGCGAACAGTGCTGCCGCGTCGGTGAGCTGCCGGGCGACGGTGGCGGGTTCCTGGAGGGCGTAGCCGTCGTGCTCGACGCGTTCGTCGCGGCCCATGGGCTCGGCTACCGGGGTGTTGCTGCGCCGGGCGGCCAGTACCCGCTCACGCTGGACGAGGAGAACGTCTCTGACGTGGCAGGCGTACTCGAGTGGCGACCAGATCCCAGGGGCCGGCCGCGGCGCGCAGGCGTGCGGTCCGTGCAGGAAGTCCGCGAACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCCGCGGGGATCGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGACCCCGCACCCGCGGGGATGGTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60185-59089 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFML01000079.1 Streptomyces roseus strain ATCC 31245 contig_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================== ================== 60184 28 85.7 33 TC...........TC............. CGCGTGGGTCAAGGCTGGCCGCTCGCTCCACCA CA [60177] 60121 28 85.7 34 ..G...........C.....T...C... CGTTCGCCATGGTGACGAGTGAGGGAGTCAGCTT 60059 27 75.0 184 T.G.A.........C-.......A.C.. GATCCACACGATCAGCCGGGCCGGGTGGTGGATGTGCACCCGGCGCGCCCGAGGGGTGGGTCAGGGATCCAGAACTATCCGGCCGCTGTCGAGTAGGTCGTCCCCGCGCCCGATCTCCGCCTGTACTGAAAAGCAACCAAATGAAAATAGCTACCTTGGCCGATAGAATCCCAGTTCAGAAAGC 59848 28 100.0 33 ............................ TCCGATCAGCCCGCGCCGGACGAGGATCGCTCG 59787 28 100.0 33 ............................ GGGCTGTCGGCTGAGGAGCGGGCGCTCATGGAG 59726 28 100.0 33 ............................ AGACGACGCTCCTCGACGGCATCCTGGCCGCAT 59665 28 100.0 33 ............................ GGAAGACCTCCTCTACCTGCGGATCAACGCGGT 59604 28 100.0 33 ............................ GTTCATCGGCGCCAAGATCACGACCGTCTTCAC 59543 28 100.0 33 ............................ TGGTTCCCGCGTGAACGTGTGCGCACCGACCAC 59482 28 100.0 33 ............................ GTTGGTTTCCCCGGCCGTGCGGACGCCGGAGCC 59421 28 100.0 33 ............................ GTTCGCGTTCGTAGCGCTCGTAGGGGCCGGCGA 59360 28 100.0 33 ............................ GAGGATCGCGCTCGCCGCGGCGCGGGCCTCGGT 59299 28 100.0 33 ............................ GCGCTGATGGACCGGAAAGCCACCGGGCAACGC 59238 28 100.0 33 ............................ CCGAGCCGCCATCACCACCGCCGCCGCGATCAC 59177 28 96.4 33 ...........................T GGACGCCCACGGCGACTTCCGGCACGGCCACTG 59116 28 85.7 0 ..............C..A.......GT. | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================== ================== 16 28 95.5 43 GTCGCCCCCGCGCCTGCGGGGATCGTCC # Left flank : GAAGTCCCCCCGGTTCCAACCTTGTTGATGTCCCACTGCGTCTGGCGCCGCCGTGAGACGAGAGCATCCTGGCACCCCCGCGCACACCCCCACCGCCCACGCGCCCTGTTTGGTTCACGCCTGTCCCGCCCCACACGGCAGCGCCCCAGCCGCTCAGTAGACTCATCCGATTGACCGGATAGTCATTCACCTGCGAGAACGGAAACCCGAACACCCCCTCTGGCCAGGGTCAGGAGTGTGGGCGGTCAGGCGGAGGGGGATTGGCTCGTACGCGTCCCGCAGGTCCTTGCCCTACCCTGCGCCCGACTGCGACCATCGACGCGACGCCAGGGGCACCCCCTTGGCGGCTGACCCTGATCTGCTACCGGTTCCAACCGCGGCACCCCCAGGGGCAAATCCGCACGATCGTGCTGGCGCACGAGCGTGCCATCGGAGCCGGCGCCCCTTGGGGCCCGGCTCCTGGCATACCCGGCTCACTACGGGGTCTGCAACATCGCCCC # Right flank : CGTCAGTCGGGAGGACGTGCAGGTCGGGCGCGGTTGTCAGTGGTGGCTTCTAGTCTCTGGTGTTCTTCGGTGGAGCGTGTGGAGGCGCGGTGGATTTAGGGGAGTTGCAGGAGCGGTACGGCGTTGCTGCTGCGGGGGCTTTGGGGGTGTTGTGGGGCAAGTCGCGTGAGCGGGCGGGGGGTAGTACGGCCCTGTTGTTAGGGCATCTTCTGGATACGGCTGCGGTGGGCGAGTTGCTGTGGGACGGCATGCTTGCTCCCTCGACACGGTCGGCTCTGGATGGGGTCACCGGCGGGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.96, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCTGCGGGGATCGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //