Array 1 294065-294825 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOPQ01000002.1 Escherichia coli strain MOD1-EC6871 MOD1-EC6871_2_length_386131_cov_35.2917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 294065 29 100.0 32 ............................. CCTGTTGGGGAGGTACGCCTTAACCCGGATCG 294126 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 294187 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 294248 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 294309 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 294370 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 294431 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 294492 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 294553 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 294614 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 294675 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 294736 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 294797 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320526-322262 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOPQ01000002.1 Escherichia coli strain MOD1-EC6871 MOD1-EC6871_2_length_386131_cov_35.2917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320526 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 320587 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 320648 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 320709 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 320770 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 320831 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 320892 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 320953 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 321014 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 321075 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 321136 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 321197 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 321258 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 321319 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 321380 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 321441 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 321502 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 321563 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 321624 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 321685 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 321746 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 321807 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 321868 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 321929 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 321990 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 322051 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 322112 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 322173 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 322234 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //