Array 1 18676-18295 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAWM01000037.1 Corallococcus interemptor strain AB047A NODE_37_68355_cov_64.1812_ID_7993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 18675 27 85.2 30 AA........C....G........... TGAGGAAACCGGCTCAGCGGCGGGAGCCCT 18618 27 100.0 33 ........................... GATCGAAGGCCCGCCGGCAGCGCCAAGAAACCG 18558 27 92.6 33 ...............G.........C. GAGCCAAAGCCCGCCGGCAGCGCCGGTGAACCA 18498 27 100.0 33 ........................... CAGCGAGGGGGCTCCGGTAGCGACTGGGAACCG 18438 27 96.3 30 ...............G........... TGGCGAGGCCGGGTCGACGGTGGGAGCCGT 18381 27 92.6 33 ...............GC.......... TGTGGAGACCGGGGCGGCGGCGCCGAAGAACCG 18321 27 92.6 0 ..........C....G........... | ========== ====== ====== ====== =========================== ================================= ================== 7 27 94.2 32 CGAACCTGTCGGACACTCGGACAGGTT # Left flank : AGCGTGCTGCTGGACGCGGTGCTCACGCAGCCGGATGGACCGCTGTCCGGACTGTCACTCGTGTCCGAAGAGGAACGGCGAAAGCTCCTGAGCGACCTGGCCGGAAGCACGTCGCCCTTCGACGGTGAAGGCACGCTGCACGGCCGCTTCGAGGAGCAGGTGGCGCGGACACCGGACGCCGACGCGGTGGTGTTCGGGGAGACGACGCTGTCCTTCCGGCAGCTCAACGCCCGGGCCAATCAGCTCGCCTGGCACCTGCGGTCGCTGGGCGTGGGCCCGGAGGTGACGGTGGCCCTGTGCCTGGAGCGTTCGGCGGAGGCCATCATCGCGCTGCTCGCGGTGAACAAGGCCGGGGGCGCCTTCGTGCCGCTGGACCCCTCCGCCCCCGCCGCGCGCAGGTCGTTCGTCCTCAAGGATTGTGGCGCGACCGTCCTGGTGACGACGCGAGCCCTGCAAGAAGCATGGCGGCCGGAGGTGGCCCACCTGGTGCGGCTCGACGA # Right flank : TTCGGACAACCTGCCGCCGGCGGCGGGTTCGGGGAACCTCGCCTACGTCATCTACACGTCCGGCTCCACCGGCACGCCCAAGGGTGTGATGGTGCGGCACCGATCGCTGCTGCACCTGCGCCATGCGCTGCTGCGGACCGCCTATGCGGATCAGCCCTCGGGGCTCCGCGTCAGCGTCAACGCTCCCCTGTTCTTCGACGCCTCCATCGAGCAGGTGCTCCAACTGCTGGGGGGCCACTGCCTGTGCCCTGTTCCGGAAGACCTCCGGCTGGAGCCGGAGCGGATGCTCACGTGGCTGGAGGAGAAGCGGGTGGACGCGCTGGACTGCACGCCCGCGCAACTGAGGCTCCTCCTGGACGCCGGAATGCTGGAGCGCTCCCGCGTGCCGTCACTCATCCTGGTGGGCGGTGAGGCGCTGGACGAGGTGATGTGGCAGCGGCTCGCCACGACCCGGCGCACTCGGGCCTTCAACGCCTACGGCCCCACGGAATGCACCGTGG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGAACCTGTCGGACACTCGGACAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 51533-46496 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAWM01000034.1 Corallococcus interemptor strain AB047A NODE_34_72321_cov_79.3968_ID_7987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 51532 37 94.6 36 .................A...........T....... GCCACCAGCCCCGGCACCTTCGCGCCCTCCAGCGCG 51459 37 100.0 38 ..................................... GCCCAGCGGCGCAGCGTCCGGGGCGAAACCTTCGCGCG 51384 37 100.0 32 ..................................... CCCAGTACATCACCGCAGGCGACGCCGCGAAG 51315 37 100.0 33 ..................................... CCGCGCAAGGGGAAGGGCATCCGCAACGACTTC 51245 37 91.9 27 ........A.....T....T................. CTCAAGCGCAAGCGGCCAGCAACTCCG Deletion [51182] 51181 37 97.3 34 ....................................T CTGGGAGTAGCCGCCCTGCCCCGGTGCGTGAGAG 51110 37 100.0 38 ..................................... CTCGCGCTGCTCACCGTGGACGCGCCGGCGCCGCTCCA 51035 37 100.0 36 ..................................... AAGGAAAACCCGGCCGTCGCGCTGCTGGTGCTGGCG 50962 37 100.0 33 ..................................... GGGCGGCAGCTTCCTCCTCTACTACGACGAGGT 50892 37 100.0 35 ..................................... CTCCTCCTGGTGGGAGCGGCCGGTCTGCTGGCTTC 50820 37 94.6 36 .G................A.................. ATGGCTCGTCAGCCGCCCTTGCTCTTGCCCAGGTGT 50747 37 97.3 34 ................A.................... TCGTCACACCGCTTGAAGTCCCCGTGGGTGTTCG 50676 37 97.3 34 .............................A....... ATGTAGAGCCGGACCCACGGGCCAATGTTCTGCC 50605 37 97.3 34 .......................C............. TTGAGCCAGGTGAGGAGCGCGTTGTTCTTGGTGA 50534 37 100.0 33 ..................................... AACTGCTGCGTCACCACGCCCATCGCAGTGGCG 50464 37 91.9 35 .................A.G.........T....... CTAGTGGCCCGCTGTGACGGGCAGCCCATCCGTTG 50392 37 97.3 36 ......................G.............. ATTGTCCGGCTTGCTTCTCTGGACACTGCGGGGACT 50319 37 97.3 37 ...........................A......... ATCCTGGTGCTCGCCGACCTCGACAACTCCTGCGTCA 50245 37 100.0 33 ..................................... GACATCGAGGACATGATCCCGGGCCAATTCGAG 50175 37 100.0 34 ..................................... ATCATCGGCGGGCAGCAGCGAAGCGCGGCGGTGG 50104 37 94.6 34 ..............................GG..... ACCCAGGGCAGGGATCCGCTGACGGACAGCGCCG 50033 37 100.0 35 ..................................... ACGATCCGCCAGTAGCGGTTCGCACTGGGCGGGAT 49961 37 94.6 36 ...................T..........G...... AGGGGAGGGGCGTGGGCAGCGTCGCCGGCAGCGTCT 49888 37 100.0 35 ..................................... TCCTCGGGGCCGCTGTGCTTGCAGCACCGCTGCTG 49816 37 100.0 36 ..................................... CACGTCTGGGCGGCGTACAGCTACGCGCCCAACGCG 49743 37 100.0 36 ..................................... CACGTCTGGGCGGCGTACAGCTACGCGCCCAACGCG 49670 37 100.0 32 ..................................... CCGTACTTGACGCCCACGCCGATGACCTGGAA 49601 37 97.3 33 ...............A..................... TTCGTGCCCAGGCGCTGGGCCACTTGGTTGTCG 49531 37 100.0 34 ..................................... CCCTACTACCAGCGCGACCTGACGAACAAAAAAG 49460 37 100.0 34 ..................................... AGCTCCGAGGTGAGGCAAAGGGTGGGGCGGCGCA 49389 37 94.6 36 .........T.........T................. TCGTCAGGATGACGGGCACCCGGAGAATGGGCTTGG 49316 37 97.3 32 .........T........................... CGCTTGAGCACGGCGGTGCTGCGGACACGAAG 49247 37 100.0 37 ..................................... ACCACGGCCATGAGGCGCGCGTAATAGGCGCGCTCCT 49173 37 100.0 34 ..................................... CTCTACAACGACAAGGCGAAGGGGCTGGGTGAGT 49102 37 100.0 37 ..................................... AACGACAGCTGGAACTTGCAGGGCACGCGTCCGATGG 49028 37 97.3 35 ............C........................ TTGGGGTAGCGCAGCAGCAGCTGGGAGCGCGCTTG 48956 36 97.3 35 ..................-.................. ACCAACGGCTGGAAGGCCATGACGCCGGTGCTCCG 48885 37 100.0 33 ..................................... ACCATCGCCGACCCGGCCAGGTGCTGGAGGAAG 48815 37 94.6 33 .................A...A............... AGGCCCGGGTGGCGGAGTTGGAGCGCGAGCGGG 48745 37 97.3 34 ..............................G...... CACGCTCCGTGCCCGGAGGCCCTGCGCGAGCGGG 48674 37 100.0 35 ..................................... TCCGGAAGGTAGATCTCCGGGTTCTGGTTGGCCAC 48602 37 100.0 33 ..................................... GGCGCGTTCCTGGAGCGCGAGGAAGTTCCGATG 48532 37 94.6 38 ..........G........T................. AGGTACCGGTTGAAGTAGTCGGTGTGGCTGGTGGCGCC 48457 37 91.9 34 ..............GT...T................. ACGGACGACGGCAGCATTCTCCAAGACGGCGCCA 48386 37 97.3 35 ...................................G. AGCATCCAGCCCCCGCGCACCTGCGGCACTCGAGA 48314 37 91.9 34 .......................AT....A....... GGAGGCGTGCTGGAGCATCCGCGGGACTCGCACG 48243 37 94.6 38 ...............T....A................ TACAAGGACGCGCTAATGGTCCACACCGACGGCGACAA 48168 37 100.0 37 ..................................... CTCCGCCACCCGCCACCTCCCTCGCCGTCCACTCCGA 48094 37 94.6 35 .........T...........T............... CACAGGATCAACACCATGCGTAGCATCACTGTCAG 48022 37 100.0 36 ..................................... CTGCGCATCTCCCCGGTGGAGCGGCGCACCGCAGAG 47949 37 100.0 32 ..................................... CTTGGAGGACGTGAGACAGCCAATGCGGACGG 47880 37 94.6 36 .....G......G........................ TTCGGGGAGACGGTGCGCGCCTTGCCGTCCGCGTCG 47807 37 94.6 34 ....................T..A............. GCCGCTGCCAGAAGGGGTGCGTCGCGGGGAGAAT 47736 37 97.3 36 .............................A....... ATCGCCATGTGGCGAGTTGCTGCGGTAGTGCGCGCG 47663 37 97.3 32 ........................T............ CACCGCGACCTGCGGACGCTGGAACTGCGGCT 47594 37 94.6 33 ......T.............A................ TCCGGCAACGGCCCGCGGCCATGGTTGATCGAC 47524 37 91.9 35 ...T.....T.............A............. GAGGGACCGCTGGCGAAGAAGATGTCCGTCACCGA G [47491] 47451 37 100.0 33 ..................................... ACCGGCCCTGTTACCGTCGATGCGTACGCTGCC 47381 37 97.3 37 ..........................C.......... CAGCAGTGGGCGGAACAGGAGACGGAGTTCTCCAAGT 47307 37 100.0 34 ..................................... CCCAACACCGCCCTGTGCGCGCTGCAGGTGGCGG 47236 37 97.3 34 .........................A........... TGCATCGCCATGTTTCCGCCGGTATTCTTCGCCA 47165 37 94.6 35 ....................T..A............. ACCTGCTCGGCGATGCCGATGTGCTGCGGTGCTAT 47093 37 97.3 37 .................T................... TACAACCAGCAGCGGGCCGACCGGGCCGTCGTCAAGT 47019 37 97.3 35 ....................................A CTCGCGGTGGTGGTGGCGGCGGCGTCCTGGGCCTC 46947 37 100.0 34 ..................................... AGGTTTCCGGTGTAGTTGTTGTTGATGTCGCCAG 46876 37 97.3 35 .......................A............. TTGGGGTCGCACAGGAGGGCCGCCGTAGTGTCCTG 46804 37 91.9 34 ..........G........T...............G. TCTTCCAGAGCGATAAGCACCATCTCCCCGGGGG 46733 37 94.6 33 .G...........................A....... GACTCTCCGCGCCGGTACTGCATCAGGTCCATG 46663 37 100.0 33 ..................................... CCGGGGGCAACACGGGCGCGGTGGAGGCCATCC 46593 37 100.0 25 ..................................... TTGAGGAAGTGCGGCTCCGGGTTGA Deletion [46532] 46531 36 75.7 0 CGGTG...-.GGG........................ | ========== ====== ====== ====== ===================================== ====================================== ================== 71 37 97.2 34 GTCGCTCCGCTCTTCGGGGCGGAGCGTGGGTTGAAAC # Left flank : TCGCCCTTCCGGGTGAGGTGACGGGATGCTTGTGCTGGTCTGCTACGACGTGGCGAACGACGACACGGCGGGGGCGCGGCGGCTGCGGCGAATCGCGGAGGCGTGCAAGGACCACGGGGTGCGGGTGCAGTACTCGCTCTTCGAGTGCCGCGTGGGGAAGCGCGAATGGGTGGCCCTGCGCCAGCGGTTGTTGGACGAGGTGGAGCTGGCGAAGGACAGCCTGCGCTTCTATTTCCTGCACGCCGACGAGGAGGCCCGATGCGAGCACTACGGAGCGAGACTGCCGCTCGACCCGACGGGACCGCTCATCGTGTGAGGTGCGGCGCGAACCCCTCCCGATGGAGGGCCCGCCAGAGGTTCGTGCTCGGAGAATCCCGAGTGAGGCCGCGAGGTTGCACGGAGGGAGCTGTCCTTTTTTGTCGAGTGGAGACCTCCGGAGCGGGAGGTTCGCGGAAAAGGGCGGATATTCTTTGGAAATTTCATAGGTTGTGACCGGTAGG # Right flank : TACGACTTGCTAACGACGAAGGGCTACGGCCTGGGTTGCGCCGCGCTTCGGGGCGGAGTGCAGCGAGCATCACGCCGTCAATGCCGGGCCATGCTGCTCCGCCGGAGCGGCGTGGCGGCAGAGTGAACGCACGCGATCAACTGTGGTTTCCTGAGGTGGCTCCGTGTCGATGAACGCCCTGCTCGAAGAGGTCTCGCGCCTCCACCACGCACGCCCTCCCGCCACGCCCGAGCAGATCGACGCCTTCGAACAACGCGCCGGATGGCGGTTGGACCCGGACCTCCGCGCCTTCTACCTGCACTGCGATGGCGCGGACCTCTTCGACCGAGTCGACCCCGCGTTCTCCTTCCCGCCACTGTCCGAGCTCCGCCGCGCGCGGATCGTCATGAGCCAGGACGACACGGACCGGTCAGGCCCCGCAGCCTGGTACGCCATCTGCGAGGTCCGCGACGGGAACTACGTCCTGCTCGACGTGAGCCAGCAGCACGACGGCCGCTATC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCGCTCTTCGGGGCGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //