Array 1 1262-2027 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWM02000069.1 Leptospira mayottensis 200901122 ctg7180000003544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1262 29 100.0 32 ............................. ACTACTGAGCGCGCATCAGAACAATCCAATGA 1323 29 89.7 23 ........................TGT.. CTCCTACGGGGTCGCGACCCGAC AC [1346] Deletion [1375] 1377 29 96.6 44 ............................T TTTTATGGCAAGAGGTCAATACTCATGTGACTGTTCTCTTCCAG 1450 29 100.0 32 ............................. GTTGAGCTTGCAATTTTTGAGGCGGAAATTGC 1511 29 100.0 32 ............................. GATCGGAAATGGTGTATATATCGGATACTATG 1572 29 100.0 32 ............................. CTCTAAACGAGTAGGGGGGATTCCTGTAGCGA 1633 29 100.0 32 ............................. ATGCAATTATACAGGGGCAAAAAACCCGTGAT 1694 29 100.0 32 ............................. CTACAATAGAGCAATGCAGAGAGGACCTTCTT 1755 29 100.0 32 ............................. GGCTGCGGGCCATCAATTTGGTTTGGTGACGA 1816 29 100.0 32 ............................. AAAAACGTATTATTCTTACTGCGATTCCAGGA 1877 29 100.0 32 ............................. GAGAGAGAAATCCGCAGGCTCTCGAAAATCTA 1938 29 100.0 32 ............................. ACGGAGAAGTTCGATTCCCGGACGGAAGAGCG 1999 29 89.7 0 ..........................ATT | ========== ====== ====== ====== ============================= ============================================ ================== 13 29 98.2 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCCGGATAATTGTGAATCTTGTTACGTTCGAAGTACTAATGCGATTCTTATACCGGTTCCAAATATTTCAATGAAAATTGATTTAGAGATATGAAAGACTCAACAGTTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCTTGGAGAACTAACTCGGTGAGATATTTTAGACAATCCGTTTAGAGGTTTTTCGCAATTTCAGTCGGTATTTTAAATGGGGCCATCTTACTTTTACTCTTTTCAATTTTGTTTTTGGCTACTTCCTTTTTTTCAGCAGAAAAAAGTCAGCGCGTTTTAGTTGTTAATGACAATCTTCAAACACGGATTCTGCACCGCATATCAGTGGGACTTGATTACGGGTAAAGTTGTAAAAAGCTTCCTTAGAAGCTCGTGTTCTTAGTAAGACGATTTGCCATCATAAATTAACTTGGACACGAAACCCAAAAATAGATTGCAAAATCCAGATTTATCCTATACAAGTTTTTAGC # Right flank : TTTCAGTCAAAACAGATCAGTAATAAAAATTCGGGAATAGAATCCAATTTAGAACTTTCAGTGTAAAAAACTAAGAACCAGTCTCAAAACCTAAAAATGTAGGAACTCTTACCAATTTTAAACAAGCCGCACAAAAACGGTATAAACCGCCAATGCGACGTAATCTGTGGGAACTCCCACATTTTCTTAGAAACTTACCGGACACGAAAGATACTCTTTGAAGGTGTTGAGACGAACTCTAAAACAAGCATAAGGCGATAAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGATTGAGATACCTTCCAACCGGATTCGGTAATTTTCATAAGAGTATTGTTTTGATCCAAAGATTCGAAAATCATTTCCGTTTTGGTTTTATATCCGCCAACAGTTAGAAGCTCATTTTCACCCTCATAACT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 686-1509 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWM02000060.1 Leptospira mayottensis 200901122 ctg7180000003512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 686 29 100.0 32 ............................. GAGAAATCAGTCATGAAAAAAAATACCATCAT 747 29 100.0 33 ............................. TAGAGTGTGCAATACCCTATTAATAAATGGTAA 809 29 100.0 32 ............................. AACAGATCGAGATTCTTCGGGCCGAGGGATTT 870 29 100.0 32 ............................. GAAGCGGAAATTGTTGCACTAGGTGGTTTCCA 931 29 100.0 33 ............................. GCTGTGTTCCCTCGTTTCGCCCGCACAAATTCC 993 29 100.0 32 ............................. GGACAAAAGAATTAAATCATCTCAACTCGGAC 1054 29 100.0 33 ............................. GCTGTGTTCCCTCGTTTCGCCCGCACAAATTCC 1116 29 100.0 32 ............................. GGACAAAAGAATTAAATCATCTCAACTCGGAC 1177 29 100.0 32 ............................. GAGCCGGACTCATCATGTCGCTGGCGACCTGC 1238 29 100.0 32 ............................. CTGGAACGTTGGATGACATTTGGATGTATGCA 1299 29 100.0 32 ............................. GAAAGGCGATCACAATAAAATCAGAAAACCCA 1360 29 93.1 32 ............TG............... AATCTCGGAAAGAGAATCTCTTGGTACTCTAA 1421 29 100.0 32 ............................. ATCCGCACCGTCTCCGTTAAAACCTCCCTTAA 1482 28 82.8 0 .................-......C.TTA | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.3 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : ATACTTTTTTCTAGGATTGTATGAAAACGACGCATTTTGTTCTATGCGCACCCTCATTTCTTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTCATAACATTCAATTAATCTAATTCCGATATATATAATATTATGATAAATAATTTCTCACTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAGATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTAATATTCCTATTTCGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAGCCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCATATTGGAAATGATGAAATTGATATGCGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGCGAATGTAAACCGAAAGAATGGATCTGTATTTTTACAACTCAAACATCTATGTAAAAGCAGGAGATGACGGTTCCAAAGCGAGAAACCTTCCTTATCGTTTACCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25268-24750 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWM02000082.1 Leptospira mayottensis 200901122 ctg7180000003532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25267 29 100.0 32 ............................. TTCATGAGCATTGATACTTCTCCAATCTAAAA 25206 29 100.0 32 ............................. TAATGGTGGAGTTCCACATAAATGCGTCGACA 25145 29 100.0 33 ............................. TATTGCTTGAGATAATGGGGAGCAGGACGATAA 25083 29 100.0 32 ............................. ACGGCTGGATCAAGTTCGAAGCGGATGTTTCT 25022 29 100.0 32 ............................. ATTCAATTGGGAAATTCAACGGAAAGACTTTT 24961 29 100.0 32 ............................. GGAAAAGGACTTGAAGACGAACGCTCCGGTCT 24900 29 100.0 32 ............................. AACTGAGATATTTCGTTCGATCTAAAATGGAC 24839 29 100.0 32 ............................. CAACTTGAGACAGGTAGGGAAATTCCCCGCCT 24778 29 86.2 0 ........................C.TTA | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.5 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAAATACTTTTTCAGGATTGTATGGAAACAACGCATTTTGTTCTATGCGCACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTCATAACATTCAATTAATCTAATTCCGATATATATAATATTCTGATAAATGATTTCTCACTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAGATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTAATATTCCTATTTTGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAGCCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCATATTGGAAATGATGAAATTGATATGCGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGCGAATGTAAACCGAAAGAATGGATCTGTATTTTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTTCAAAACCAAACACCTTCGGGAGAATATCCTTTTATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 249132-248675 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWM02000002.1 Leptospira mayottensis 200901122 ctg7180000003530, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 249131 29 100.0 32 ............................. ACGAAGGCTTCGGAAAAAAAGAAGCCGGATTC 249070 29 100.0 32 ............................. GAAGCGATCCAGTCGGGACGAGAGTTCCCGGG 249009 29 100.0 31 ............................. GAAAGTAAACGATGGAAACAACTGCAATTTA 248949 29 100.0 32 ............................. CATAACACCAGCAACAGATAGAGTAAACATAT 248888 29 100.0 32 ............................. TTGCTTCTGCAGTCCATTGACGAATTGCTAAA 248827 29 100.0 33 ............................. CGCGAAACCGACCTCCGCCAGTAGAAGGTTTAA 248765 29 100.0 32 ............................. TTTATATAGACGGAGTTATTGCAGCGTACATA 248704 29 89.7 0 .........................G.TT | T [248679] ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.7 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAAAGAATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCGGGCGTTTTTGTAGCTTCCATTAACGCTAGAGTTCGAGATCAAATTTGGAAAAAAATTTCCGAAGAATGGAAATCGGACGCGATCATGTTGTATTCGAGCAACTCGGAACAGGGTTACGGCATCCGCTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCTAAACACGATCAGAAAGTAATCATGAGTGTTTCCGATTTTTCTAAGGTTACCGAAGACGAAGTTTCTCCTTTTTCAGATCTTAAAGGCTTTTTCAACGAAAAGGCAAACTCCCTTCTTTTAGAAGCAGATGATCCTAATGAATCTAAAGAACAGACATAATTCTTAAGACTCCTATACAAACTTTTAGC # Right flank : TCAATTCCTAACCGGTGTCGGATTTCTATTTTTTATATATGTAAGGTGAATCAGAGGATCAAATTTTTTACACGTGGATTACTAACTTTAACGATTGTACAAGTAACTTGGTCCGCAAAATCCGCTCAAAGATTATAAGCTGGAAAAAATCATAACGAAACGTATCGCAGAAGAACAAATCCAGAAGACATACAAGGAATCTGAATCTAATTATAAAAATTATTTCCTTTAAAGATTTCTTGAATTGTTTCAAACTTTAATATAAATTTTCCTTTTATCTAAGAAACTTAAGATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAACAACGATGCAAGATACGGATCTGCAATGAAAACAAGTTTAGAAAAAAACCAAGTTTTGATCCCAATCGATTTTCCATTTTCTGACATGATTGTCCAAAGGTTGAGAGTCCTCGCGAGTATTCCGGAGCCTACAAAGACTAAAATCGCATTTTTACCGAATACGAGTAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //