Array 1 81704-79052 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLY01000004.1 Bombella mellum strain TMW 2.1889 Saccharibacter_sp_TMW21889_seq4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81703 29 100.0 32 ............................. GCAGGGTGTTGAGGTCTGGTCTTATGGGCCAG 81642 29 100.0 32 ............................. GAGCCTCCGTCAAGCGCATTCCTAGGGTAAAA 81581 29 100.0 32 ............................. CTACACGCAGCGGGACCTGCTCAGCGTGGCAG 81520 29 100.0 32 ............................. GCTGGTGGTCTATTTCCAGTTCTTCTAGATCG 81459 29 100.0 32 ............................. TCCCGGATAAACACCTGCTCAAAATCGAGCAG 81398 29 96.6 32 ............................C AGATGCAGAATGGTGGTGCGGGTCGGGGAGCC 81337 29 96.6 32 ............................T GGTCTGGGCTGTTTCCCTCTCGACAATGGACC 81276 29 100.0 32 ............................. ATTCTGGAGGTGTTGCGGCGGATCGAGAGAGA 81215 29 100.0 32 ............................. CAACGGTGGATGCAGTTTGCTAAGGGCTTGCA 81154 29 100.0 32 ............................. CAATTCACGAAACTTACCCGCTTCTTTCAGAG 81093 29 100.0 32 ............................. GAGCGCATCCCGGAGATAGAGCAGGCCGGTGC 81032 29 100.0 32 ............................. GTCCACACACGACCGACGCGGGCAGCTATCAA 80971 29 100.0 32 ............................. GAGAGATCGCCATGACCAGCCTGATCTTCCCG 80910 29 100.0 32 ............................. AACGATAGCGAATGGCGAGGCAGCCGCTAAAG 80849 29 100.0 32 ............................. AAATCCCTTTTGTGGTTATGCATGCTCCCCCA 80788 29 96.6 32 ............................T TAGATCTAAACTCACCCTGATCTCCAGTATAG 80727 29 100.0 32 ............................. GTGGCCAAAATCTTGGACGATAGGGGCGATAT 80666 29 100.0 32 ............................. GATAGAGAGCCTGAAAACAGGTGGTTTTTCAG 80605 29 96.6 32 ............................T GTATCTGTCTTTCTGCCAAACGGGCAACCCCG 80544 29 100.0 32 ............................. AACTAGCATCAGAAATTGGCTGTTCACCACAA 80483 29 100.0 32 ............................. CCACCCTGATTCAGCAGAGCGGGGCACTTCCT 80422 29 100.0 32 ............................. CCACCCTGATTCAGCAGAGCGGGGCACTTCCT 80361 29 100.0 32 ............................. CCAACAAATAACACCCCCTACTGGGACCGAAC 80300 29 96.6 32 ............................T CATTCTGGGGAGTTTCTGATGGCCGAGGATAC 80239 29 100.0 32 ............................. CAGAAAAAAACAGCTTGAGACGATAGGAGGGA 80178 29 100.0 32 ............................. TGGACAGGGTAAACCTGAACAATCTGCGACAG 80117 29 100.0 32 ............................. CGCATTGACAAGAACGGTCATATCATCTCATC 80056 29 100.0 32 ............................. CATTGCCCGAACGCCTTCTAACCCTCTCAATT 79995 29 100.0 32 ............................. AGGTCGCCCCCGGTCAGCCCCTCCAACTCATG 79934 29 100.0 32 ............................. CGGATGGCGAATCCCCGCACGGCCCGCTGGAA 79873 29 100.0 32 ............................. AACAATACGTCGTGCGGGTTGAACCTGTATCG 79812 29 100.0 32 ............................. GCGTCATCCTCGCTCTCGCCGGACGCCCTGTC 79751 29 100.0 32 ............................. GGGGCTGTGGGTGACGCCGTTGGATCTGTGGT 79690 29 100.0 32 ............................. GAAAAAACGCCCTGTTGAGCCAATTCTTCCGG 79629 29 100.0 32 ............................. TCCGACAGTCAGATATTACGATCTTACAATTA 79568 29 96.6 32 ...........................T. CACAGAATGAGATCGGGAAATATCCGGCCCTG 79507 29 100.0 32 ............................. TGCAATATGATGCACAGCTTAGCTATCCGCTG 79446 29 96.6 32 ............................A GACAGGGCTAGGCTGGCCCCGGCCAGGGACCC 79385 29 100.0 32 ............................. TGGCACCAGCGATCGCAAACGAGTGAGCGTGC 79324 29 100.0 32 ............................. ATCACATTACGGAGGCCGCCCAGACCTCCATT 79263 29 100.0 32 ............................. CACGGGTACAGGTGGTTCTGCCTGACCTGCTA 79202 29 100.0 32 ............................. AAGGAGCTCGATGCCTGGAAACTCCGAGGTCT 79141 29 100.0 32 ............................. AGCCACTTGTGGCTCCCGCAGGCACAGACGCA 79080 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.5 32 GTGTTCCCCGCCCCTGCGGGGATGAACCG # Left flank : GGGACCGTGTCCGCATCGTGTACTGCATGGCCCTCCTGCTGGAGCTTCTGCGGGGCCGGAACGAAAAAGGCGAGCCGATCAGGCTGAGCGAGCCGTTCCTGACGGAAGAACAGCTGAAGACGGCTGCTTCCGATGATTATACGGCGTCCATAAGTCTTCCTGCCTTTGACAGCTGGCGTGATCTTCTGACACCGGAGATCGAACAGGAAATTGCCCGTGATCGGGAGGTGATCCGCAAGAAGGGTGTGCTTGCCAGCCTGCCCGTGTGAAACGTCGTCCGGGACATCCTGTCCTGATGGTCTGGGAGGGGGAGGCTTCGGCCTCCCCCTCTTTTTGTATCTGTGGTCATTTTTGTGGATAACTTTGTCCGTCCGATGGGTCTCTGAAGCCAGGGAGGGATGATCTTTTGCTTGCCCTGAGTGGGACATTAAATTTATGTTTAAGTTGGTACGGTCTTTGACAGCAAAAAAAGAATTAGATTACATACGGTTACAGGAAGT # Right flank : AATTGAAGTAAGGGGAGAGAAGGGAAACCTTTTCTCTCATGGTAGGAGCGAAACGATGAGCCGTATTTTTGATACAGACGTCGGACTGGTCATCTTTTTTTCCGTGGCAGGGATCATCAGCCTGCTGGGTGGCCTGTATCTGGGCTACACATGGTGAGGAGAATTGACATGACACCGGAACGCTTTCGGGAATGCCTGACCCTGATGAACTGGCCGCAGCGTGGGTTTGCCAGCATGGTGGACCGTGCGGAGGGTACTGTCCGTCAGTGGGCCAGAGGGAAAGTGATAGTCCCCGCTGATGTTGCCTCATGGCTGGAGAAGGTTGCGGCCTTTATGGCTGCCAATCCAGTGCCAGTGCGCCAGAGGGTGGAAGCATAGGCGGGGTTATTGCGGCGTTCCCGTACTCCCACCGCCTGTCTGCACTCCGTCATGCACATGCCGGTCCAGACTGATGCTCCCGCCGTGTTCCCCGCCCCTGCGGGGATTGTGGAGGAAAAACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1071-177 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLY01000003.1 Bombella mellum strain TMW 2.1889 Saccharibacter_sp_TMW21889_seq3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1070 36 100.0 30 .................................... CTGGGCAGTAACCTTCCCATGCGTCAATAG 1004 36 100.0 30 .................................... AATGCACTGCGTACATTGAAAACTTGTTGA 938 36 100.0 30 .................................... CCCAGTCCAGACGGGCTGCCCCCATGCGTT 872 36 100.0 30 .................................... TCGGGGGTGAACTGAATGCATTTCTACGGT 806 36 100.0 30 .................................... ATCTCTCCATTGTCCAGAAAAACAAAGACC 740 36 100.0 30 .................................... GGTATGGACACAGTGCTTCCACACTAGGGG 674 36 100.0 30 .................................... CGGGGAGTTGTCCTTGAACTGCCGTGCCAG 608 36 100.0 30 .................................... ACGTTCCGTTCATATCCGGTGGGAGAATGT 542 36 100.0 30 .................................... CCAGCTGGTGGACGGACAGCCGCAGCCGTC 476 36 100.0 30 .................................... CCAGATTGTTGCCCCAAGCAAGCCATTGGT 410 36 100.0 30 .................................... TGTTTTATCGTTGGACCCTGAGCTTCTTTT 344 36 100.0 30 .................................... AACTTCATCCAAGTGGTTGCGATTGATGGG 278 36 100.0 30 .................................... CAACGTTGACATCCGGGCAGTTCGTGACCG 212 36 97.2 0 ..T................................. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 AGGCTACCATAGACAAATCGGTAGGGAAACCACGGC # Left flank : TGTAAGCATTCTGACAGCCACAGAAAAGATTGCCACCAGTCTGGTACAGGCTCTTGAGCATAGCAGTGCGGCCCTGCTCCAGTTGCCCGTCCTCCCGACGGGAGGAACAACCCCATGAAAGCGGAGGAGGCCCGATTCTTGTGGCTGATGATTTTTTTCGATCTCCCTGTCCGGACAAAAAGCCAACGTCGACAGGCCACCCGTTTCCGCAATTTTTTACGGGACGATGGTTTCATCATGCTACAATATTCTGTCTATGTCCGTGTCGGACGTGGTCAGGACAGTCTGGACAAACATGTGCGTCGTGTGCGCTCAGTCCTGCCCAGAGAAGGCAGTGTCCGGGCACTTCAGGTCACGGACAAACAATACGGACGGATGGAAATAATGCTTGGTCTTGCAAAAAAAGCCGAACAAGCAGGCGCAAAACAGATGATACTGCTATGATTTTCGGCCGCAAAACAGCGAAAAATCATGCAGTATCAGTCCGTTACGCTCAAGCT # Right flank : CATTCTCAACACCATCGGTCTACGCGGGGAGGATAGCATAGGTTGGAGAGTATGTGGAGTGATGCCACGCAGCCTTATTTCTGGCTCGAGCCTGACGACCTGATTTATATTTGAGGGGGAGTATATGGATGGATGCGGGGGTAGGATTTGAACCTACGACCTTCAGGTTATGAGCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGCTACCATAGACAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9383-10204 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLY01000005.1 Bombella mellum strain TMW 2.1889 Saccharibacter_sp_TMW21889_seq5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9383 29 100.0 32 ............................. TTTCTCTCCCTACGCTGACTTCATGGATGGAA 9444 29 100.0 32 ............................. ACGGCCACACAGAACTTTTTCGTGAAAACGTA 9505 29 96.6 32 ............................T CAAACCAAGCATGTGTGGGACGCTATCCGTGC 9566 29 96.6 32 ............................T GAACTGGAGACGCTTCCATTTGTCTCAAGACT 9627 29 100.0 32 ............................. AGGGCCAGCGTTCTGGTCCCCCGGCAGAATCT 9688 29 100.0 32 ............................. GTGGGCGTGTGGTCCGATTTCTCCAGCACAGA 9749 29 100.0 32 ............................. GGCGGCGGCAAGCTGGCCAGATACCTGACGGA 9810 29 100.0 32 ............................. TACTCACGGGGGACTGGCCGATTTTCTCTGAT 9871 29 100.0 32 ............................. GTGAGGCTGGTGGCCCACTGGGGCATCACCTC 9932 29 100.0 32 ............................. GCACGACACCGCTTCCCTTCCAGAGCGGAGAC 9993 29 100.0 32 ............................. CCCGTCCCGTCATCGTAATATCCGATCACATT 10054 29 100.0 32 ............................. ATTTCCTCCCTGTCATGAGGTAGGCGTTCTCC 10115 29 96.6 32 ............................C CGTGAAGGCCGACATGCGGGAAATGACAAAAC 10176 29 89.7 0 ........................GT..A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 CTGTTCCCCGCCCATGCGGGGATGAACCG # Left flank : CTGGAGAGGATCATTCTGACCATTGAGCAGGTTCTTTCCGCAGGTGGTCTGCCCCGTCCCGAACCTCCACCGGAGGCCGTTCCCGTCGCTTTTGAAGATGAAACTTTTGGCGATCCGGGGCATCGCTGATGCTGGTCGTGGTGGTCACCAATGCGCCGCCCCGTCTGCGTGGCCGTCTGGCAGCCTGGCTGGTGGAGATACGGGCCGGGGTCTATGTGGGCAACTATTCCAGACGGACACGGGAGATGATCTGGGAGCAGGTACTGCTCGGCCTTGGGTCTGAAGGCGATGCTGTCATGGTTTGGCATGTTCCCAACGATCAGGGATATGAGTTTCTTACGGCTGGTCAGAATCGTCGGATGCCAGTTGATTTTGATGGATTGAAACTGGTTGCTTTTCGACCGGAATAGAGCGAAGAAGAGCGATGTTAAATTCTGGTTTAAGTTGGTACGGTCTTTGACAATAAAAAAAGTCATGTCTTACAGTATGTTGTAGGAAGT # Right flank : AATCGGTGTTCACCACCGATAGGAGAGATCGCCAAATAAGGCACGGCCGGGTGCGTAGGAACAGTTGGTCGTGTTGGTGCAGACGGAGACATATTTGGAGTTGGCAATGTTCGTGCCATTCAGCTGGAGGTGCCATCTCTGGTAATCAAGATGGGCCTCGATGTCGCCAACCAGCTGGGAGGGCACGATGATGGTGGCTGGCAGGGCACCGGCCGTTGTGCCTGTGTAGCGGACACCTCCACCAATTCCGGCACTGAAGGTACGTGTGATGATGAAATTGCGCCGCACGAAGAAGGAAGCCATGCGGGAAGGGACCGTCACGGGGCGTTGGCCTACCTGGTTCCGTGTGGCGGCACTGCCTCTGGTGATGCGTGGGTCCTGCACGGTGAAGGAGGCGAGAAGGTCGATCCTGTAGGGAAGACGTCCGACAAATTCCGTTTCAAAACCACGGGTCCGCTGGGCACCGAGCTGTATCTTGTCGCTGGAATGGAGAGGGTCCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //