Array 1 138017-137684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERI010000006.1 Pectobacterium aroidearum strain MY2 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138016 29 100.0 32 ............................. CGATTGATGATCGACTCGCAGAAATCGCCGCC 137955 29 93.1 32 ..G..........T............... TAGGAGTTATCGCTATCATGAATATCAGTACG 137894 29 93.1 32 ..G.....T.................... GGATAACAATTTCACCGGGCTATTTATATGAC 137833 29 100.0 32 ............................. GTCACTGGTACATAAACTCCTGCAGCTATAGC 137772 29 93.1 32 ..G........A................. GTAATCAAATTCCCCGGACCTGAGTCGGGGCA 137711 28 86.2 0 ........-...T..........G...G. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTATCTCGCACACCTGTGGTATTTCGTTGATTAGTTCAAAGATAATGCGGTAATCCCCAACCCGTAGCCGATATTGTTTACCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTCAGCTCGCCCACTTTTTCTTTGATTCGTTTTCGATATCTGGTGTCAATGGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAATCTTAAGCATGCATCCCTCAAACGAAATTCTTCCCTGATATAAGTTAATTATAAGACAATTTAAGGGTTATGTTCATTTTTCTTATTTTTTTTGTTGATGATTATGCTGTTCCTTCAGGGACAAATCGCGGGAATTTGACGTTGGATCAGAGCCATATAC # Right flank : TTATACCCCTTGTTGCATGTTGGTCTACATGTTCTCCGCATGGGCCAAATCCCGTTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCGTTTTTGCATTCGCCGTCACGGTGATGCGCGATGCCCATCATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCTGAGAAAGCGGCACTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGTTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGTCCCGCCGAACTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTAGGACGTGAAGAAGGCTCCGCGCTACTGGGTTTTATCTCGTCGCCGCGCGAAAATGTCGGCAGTGTGCCGCCTTCCAATGTCTTTCAGCCGATTAATG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 140871-138889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERI010000006.1 Pectobacterium aroidearum strain MY2 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 140870 29 100.0 32 ............................. CGGAAAAATATTTCACTAAGTTTGATGATGGG 140809 29 100.0 32 ............................. TACGGAAATCACGACTTCTACGTTGTTTGGTG 140748 29 100.0 32 ............................. CGCTGCCTCTTTTCTGGCATGAAATAGAAAGA 140687 29 100.0 32 ............................. TTCTCTTCTTCAGTACCGTTGTCACGAACGCG 140626 29 100.0 32 ............................. GCCAACGTTAACGGCGTGGATTACGTCGCCGG 140565 29 100.0 32 ............................. CGCCGCATGGTTTCGGCGGCTAGAGTCTCGTT 140504 29 100.0 32 ............................. TGAGGGCATCAATTGGCCTACAAATAATGTGG 140443 29 100.0 32 ............................. GGAATGACGAAAGGTGAGTATGGTATCGCTAA 140382 29 100.0 32 ............................. CGTTGATCTGGAATAACTACGAGGTCGATGAA 140321 29 100.0 32 ............................. TCGGATCTCGACCTGTAGTACCGCATCGCCCC 140260 29 100.0 32 ............................. AAACGACTCATACGATCCGCTAGCCTCACTAC 140199 29 100.0 32 ............................. CTGGTTGCAGAGATGCGCCAGAACCCTATCGA 140138 29 100.0 33 ............................. TTGGGCCATTCGATCTATGAAGTGGATATATGC 140076 29 100.0 32 ............................. ATCGTCAAGACAAACGATGATGTCCTTGATGC 140015 29 100.0 31 ............................. CCAACCCATGCACGTCGATAACGCGGCGGCA 139955 29 100.0 32 ............................. TGGCGTCAGCATTAGTTACCGCATTCTCAACC 139894 29 100.0 32 ............................. TGCAGTGGCCGCCGCCCCCATCGTTTTCTGGA 139833 29 100.0 32 ............................. ACTCGAAAACCTGTTTAATAAATATCTGCGTA 139772 29 96.6 32 ............T................ GAACGTATGAAACTTTCTGATGTTGCAACCAT 139711 29 100.0 32 ............................. CACCAACGACATGATGTCGCGCTCTTTAACAT 139650 29 100.0 32 ............................. TTAGCGGGTCTTCTCGATTGGGACGCATTGGA 139589 29 100.0 32 ............................. TAAAATCTTTCGCTATTAGTCTCGAACGCATC 139528 29 100.0 32 ............................. ATGTATTGAGCCCCCTCGTCGGAATGGCAGTA 139467 29 100.0 32 ............................. CCGTAATTTCAAATGGCCGGCTGTGGGTATGG 139406 29 100.0 32 ............................. ATAATCGGTTTTGATATGGGTTTTGAGCCCAC 139345 29 100.0 32 ............................. AAAATGAGCATTATCACATTTGGCAAGCCCGA 139284 29 100.0 32 ............................. GGGAGAAAACTCGGAAATATAAAGCCGAGGCC 139223 29 100.0 32 ............................. CACTCCCTCGCCATCTGTATTAGCACCGATAC 139162 29 100.0 32 ............................. GGCGATGCGGCCGAGCTGGCAGAAAATGAGAT 139101 29 89.7 32 ..A.........T..........G..... TAGGGCATAACAGAGGCACTAAAGACGCTGCT 139040 29 96.6 33 .............G............... TGGCACCCCACGGGATGCCTATATCTGCACAAC 138978 29 96.6 32 ............T................ TCCTATATAGACACGACAGCGGCCAGCACGCT 138917 29 93.1 0 .............T..............C | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGTGGAATTACGCCTCCGCTACCGCCGGATGATGCACAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGCGACAGCGGCCACCGGGGGCAGGGTTAAATGAGTATGCTGGTGGTTGTGACGGAGAATGTCCCACTGCGTTTACGTGGCAGATTGGCGGTGTGGTTACTGGAAGTCCGTGCGGGAGTGTATGTCGGTGATACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATTGAACTGGCGGAGCAGGGCAACGTTGTGATGGCGTGGGCGACCAATACGGAGTCCGGTTTTGAGTTCCAAACGTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGACGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAGTCCGTGGAAGCGGCTAAAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGTTTTTCTCGGGTGCGTTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAAAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCGTGAGGAATAGAGACGTCATCCTCTGCGCCATGATCGTAGGGAATGCTCTCATAGAGGGCGGGATCGTCAGCATTTTCAATAAGTTTCTGATATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //